RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 OR52A5Q9H2C5 316 aa13.36□□□□□ -0.27
VPS29-201ENST00000360579 COG4Q9H9E3 785 aa13.36□□□□□ -0.27
VPS29-201ENST00000360579 FAM60AQ9NP50 221 aa13.36□□□□□ -0.27
VPS29-201ENST00000360579 IRAK4Q9NWZ3 460 aa13.36□□□□□ -0.27
VPS29-201ENST00000360579 DHCR7Q9UBM7 475 aaKnown RBP13.36□□□□□ -0.27
VPS29-201ENST00000360579 FBXL4Q9UKA2 621 aa13.36□□□□□ -0.27
VPS29-201ENST00000360579 CSAG2Q9Y5P2 127 aa13.36□□□□□ -0.27
VPS29-201ENST00000360579 PDZD2O15018 2839 aa13.35□□□□□ -0.27
VPS29-201ENST00000360579 C5orf60A6NFR6 353 aa13.35□□□□□ -0.27
VPS29-201ENST00000360579 AGAP14A8MT82 685 aa13.35□□□□□ -0.27
VPS29-201ENST00000360579 CNOT3O75175 753 aaKnown RBP13.35□□□□□ -0.27
VPS29-201ENST00000360579 KRT38O76015 456 aa13.35□□□□□ -0.27
VPS29-201ENST00000360579 KRT1P04264 644 aa13.35□□□□□ -0.27
VPS29-201ENST00000360579 GSTM1P09488 218 aa13.35□□□□□ -0.27
VPS29-201ENST00000360579 NUDT7P0C024 238 aa13.35□□□□□ -0.27
VPS29-201ENST00000360579 PIM1P11309 404 aaPredicted RBP13.35□□□□□ -0.27
VPS29-201ENST00000360579 ATP1B2P14415 290 aaPredicted RBP13.35□□□□□ -0.27
VPS29-201ENST00000360579 SHMT2P34897 504 aa13.35□□□□□ -0.27
VPS29-201ENST00000360579 GSTM4Q03013 218 aa13.35□□□□□ -0.27
VPS29-201ENST00000360579 BOP1Q14137 746 aaKnown RBP13.35□□□□□ -0.27
VPS29-201ENST00000360579 TFDP2Q14188 446 aa13.35□□□□□ -0.27
VPS29-201ENST00000360579 SLC9A5Q14940 896 aa13.35□□□□□ -0.27
VPS29-201ENST00000360579 TAF1AQ15573 450 aaPredicted RBP13.35□□□□□ -0.27
VPS29-201ENST00000360579 RPUSD3Q6P087 351 aaKnown RBP13.35□□□□□ -0.27
VPS29-201ENST00000360579 PID1Q7Z2X4 250 aa13.35□□□□□ -0.27
VPS29-201ENST00000360579 ZNF655Q8N720 491 aaPredicted RBP13.35□□□□□ -0.27
VPS29-201ENST00000360579 OR4K2Q8NGD2 314 aa13.35□□□□□ -0.27
VPS29-201ENST00000360579 NAT14Q8WUY8 206 aa13.35□□□□□ -0.27
VPS29-201ENST00000360579 CPLX3Q8WVH0 158 aa13.35□□□□□ -0.27
VPS29-201ENST00000360579 TFGQ92734 400 aaPredicted RBP13.35□□□□□ -0.27
VPS29-201ENST00000360579 DLG3Q92796 817 aa13.35□□□□□ -0.27
VPS29-201ENST00000360579 RELTQ969Z4 430 aa13.35□□□□□ -0.27
VPS29-201ENST00000360579 FKBP10Q96AY3 582 aa13.35□□□□□ -0.27
VPS29-201ENST00000360579 OXNAD1Q96HP4 312 aaPredicted RBP13.35□□□□□ -0.27
VPS29-201ENST00000360579 HGH1Q9BTY7 390 aa13.35□□□□□ -0.27
VPS29-201ENST00000360579 WDR54Q9H977 334 aa13.35□□□□□ -0.27
VPS29-201ENST00000360579 MRM3Q9HC36 420 aaKnown RBP13.35□□□□□ -0.27
VPS29-201ENST00000360579 SLC6A20Q9NP91 592 aa13.35□□□□□ -0.27
VPS29-201ENST00000360579 OLAHQ9NV23 265 aa13.35□□□□□ -0.27
VPS29-201ENST00000360579 DDX56Q9NY93 547 aaKnown RBP13.35□□□□□ -0.27
VPS29-201ENST00000360579 CDC23Q9UJX2 597 aa13.35□□□□□ -0.27
VPS29-201ENST00000360579 CAPN11Q9UMQ6 739 aa13.35□□□□□ -0.27
VPS29-201ENST00000360579 NENFQ9UMX5 172 aa13.35□□□□□ -0.27
VPS29-201ENST00000360579 LUC7L2Q9Y383 392 aaKnown RBP13.35□□□□□ -0.27
VPS29-201ENST00000360579 ARL5AQ9Y689 179 aa13.35□□□□□ -0.27
VPS29-201ENST00000360579 MASP2O00187 686 aa13.34□□□□□ -0.27
VPS29-201ENST00000360579 ALBP02768 609 aa13.34□□□□□ -0.27
VPS29-201ENST00000360579 UGT2B7P16662 529 aa13.34□□□□□ -0.27
VPS29-201ENST00000360579 ITGALP20701 1170 aa13.34□□□□□ -0.27
VPS29-201ENST00000360579 ARHGAP25P42331 645 aa13.34□□□□□ -0.27
VPS29-201ENST00000360579 GABRA4P48169 554 aa13.34□□□□□ -0.27
VPS29-201ENST00000360579 OTUD4Q01804 1114 aaKnown RBP13.34□□□□□ -0.27
VPS29-201ENST00000360579 PRKG2Q13237 762 aa13.34□□□□□ -0.27
VPS29-201ENST00000360579 PTPRCAPQ14761 206 aa13.34□□□□□ -0.27
VPS29-201ENST00000360579 DEFB110Q30KQ9 67 aa13.34□□□□□ -0.27
VPS29-201ENST00000360579 PARP9Q8IXQ6 854 aa13.34□□□□□ -0.27
VPS29-201ENST00000360579 ZNF567Q8N184 647 aa13.34□□□□□ -0.27
VPS29-201ENST00000360579 NXPE1Q8N323 547 aa13.34□□□□□ -0.27
VPS29-201ENST00000360579 PHC3Q8NDX5 983 aa13.34□□□□□ -0.27
VPS29-201ENST00000360579 C19orf43Q9BQ61 176 aa13.34□□□□□ -0.27
VPS29-201ENST00000360579 LHPPQ9H008 270 aa13.34□□□□□ -0.27
VPS29-201ENST00000360579 XKR8Q9H6D3 395 aa13.34□□□□□ -0.27
VPS29-201ENST00000360579 CHST11Q9NPF2 352 aa13.34□□□□□ -0.27
VPS29-201ENST00000360579 OR6C2Q9NZP2 312 aa13.34□□□□□ -0.27
VPS29-201ENST00000360579 SUCOQ9UBS9 1254 aaKnown RBP13.34□□□□□ -0.27
VPS29-201ENST00000360579 FKBPLQ9UIM3 349 aa13.34□□□□□ -0.27
VPS29-201ENST00000360579 TRHDEQ9UKU6 1024 aa13.34□□□□□ -0.27
VPS29-201ENST00000360579 PLCL2Q9UPR0 1127 aa13.34□□□□□ -0.27
VPS29-201ENST00000360579 SETD2Q9BYW2 2564 aaPredicted RBP13.33□□□□□ -0.27
VPS29-201ENST00000360579 A0A0J9YY10 115 aa13.33□□□□□ -0.28
VPS29-201ENST00000360579 KDM1AO60341 852 aa13.33□□□□□ -0.28
VPS29-201ENST00000360579 JRKO75564 520 aa13.33□□□□□ -0.28
VPS29-201ENST00000360579 ANXA9O76027 345 aa13.33□□□□□ -0.28
VPS29-201ENST00000360579 CRTAMO95727 393 aa13.33□□□□□ -0.28
VPS29-201ENST00000360579 TMEM253P0C7T8 217 aa13.33□□□□□ -0.28
VPS29-201ENST00000360579 ARSFP54793 590 aa13.33□□□□□ -0.28
VPS29-201ENST00000360579 XIAPP98170 497 aa13.33□□□□□ -0.28
VPS29-201ENST00000360579 ZIC1Q15915 447 aa13.33□□□□□ -0.28
VPS29-201ENST00000360579 SLC5A12Q1EHB4 618 aa13.33□□□□□ -0.28
VPS29-201ENST00000360579 MTFR2Q6P444 385 aa13.33□□□□□ -0.28
VPS29-201ENST00000360579 ISLR2Q6UXK2 745 aa13.33□□□□□ -0.28
VPS29-201ENST00000360579 SNX20Q7Z614 316 aa13.33□□□□□ -0.28
VPS29-201ENST00000360579 TRIM73Q86UV7 250 aa13.33□□□□□ -0.28
VPS29-201ENST00000360579 OR2A14Q96R47 310 aa13.33□□□□□ -0.28
VPS29-201ENST00000360579 POLG2Q9UHN1 485 aa13.33□□□□□ -0.28
VPS29-201ENST00000360579 RSPH14Q9UHP6 348 aa13.33□□□□□ -0.28
VPS29-201ENST00000360579 NXT1Q9UKK6 140 aaKnown RBP13.33□□□□□ -0.28
VPS29-201ENST00000360579 ICKQ9UPZ9 632 aa13.33□□□□□ -0.28
VPS29-201ENST00000360579 TACC2O95359 2948 aa13.32□□□□□ -0.28
VPS29-201ENST00000360579 SOCS6O14544 535 aa13.32□□□□□ -0.28
VPS29-201ENST00000360579 CHRM5P08912 532 aaPredicted RBP13.32□□□□□ -0.28
VPS29-201ENST00000360579 ITGAXP20702 1163 aa13.32□□□□□ -0.28
VPS29-201ENST00000360579 ALAS2P22557 587 aa13.32□□□□□ -0.28
VPS29-201ENST00000360579 PDHA2P29803 388 aa13.32□□□□□ -0.28
VPS29-201ENST00000360579 SLC1A1P43005 524 aa13.32□□□□□ -0.28
VPS29-201ENST00000360579 GEMP55040 296 aa13.32□□□□□ -0.28
VPS29-201ENST00000360579 INAQ16352 499 aa13.32□□□□□ -0.28
VPS29-201ENST00000360579 SLC18A3Q16572 532 aa13.32□□□□□ -0.28
VPS29-201ENST00000360579 TUBB8Q3ZCM7 444 aa13.32□□□□□ -0.28
VPS29-201ENST00000360579 GPR33Q49SQ1 333 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms