RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 RMI1Q9H9A7 625 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 TNFRSF12AQ9NP84 129 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 INTS7Q9NVH2 962 aaKnown RBP3.92□□□□□ -1.78
LIG4-201ENST00000356922 DNAAF2Q9NVR5 837 aaKnown RBP3.92□□□□□ -1.78
LIG4-201ENST00000356922 CPNE7Q9UBL6 633 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 SUSD2Q9UGT4 822 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 TRMT6Q9UJA5 497 aaKnown RBP3.92□□□□□ -1.78
LIG4-201ENST00000356922 ASF1AQ9Y294 204 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 ACOT9Q9Y305 439 aa3.92□□□□□ -1.78
LIG4-201ENST00000356922 A0A1W2PPV9 198 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 A0A1W2PQM1 296 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 PMS2P1A4D2B8 440 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 GPR89AB7ZAQ6 455 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 G3V2L1 256 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 BTN3A3O00478 584 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 BTN3A1O00481 513 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 VPS26AO75436 327 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 PSIP1O75475 530 aaKnown RBP3.91□□□□□ -1.78
LIG4-201ENST00000356922 KRT38O76015 456 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 FTH1P02794 183 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 GPR89BP0CG08 455 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 TSPAN8P19075 237 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 EPORP19235 508 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 CD9P21926 228 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 IDSP22304 550 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 ARRB1P49407 418 aaPredicted RBP3.91□□□□□ -1.78
LIG4-201ENST00000356922 WDR4P57081 412 aaKnown RBP3.91□□□□□ -1.78
LIG4-201ENST00000356922 IL2P60568 153 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 LRP8Q14114 963 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 RASA2Q15283 850 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 ELOCQ15369 112 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 PLEKHS1Q5SXH7 462 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 STPG1Q5TH74 334 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 UGT3A1Q6NUS8 523 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 USP53Q70EK8 1073 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 PDZD3Q86UT5 571 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 LRRC56Q8IYG6 542 aaPredicted RBP3.91□□□□□ -1.78
LIG4-201ENST00000356922 DCBLD1Q8N8Z6 715 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 Q8N9G6 341 aaPredicted RBP3.91□□□□□ -1.78
LIG4-201ENST00000356922 OR4E2Q8NGC2 313 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 OR4C6Q8NH72 309 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 TCP10LQ8TDR4 215 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 RSC1A1Q92681 617 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 TMEM159Q96B96 161 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 PGM2Q96G03 612 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 NSUN5Q96P11 429 aaKnown RBP3.91□□□□□ -1.78
LIG4-201ENST00000356922 OR4K3Q96R72 315 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 PRRX2Q99811 253 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 ROPN1BQ9BZX4 212 aaPredicted RBP3.91□□□□□ -1.78
LIG4-201ENST00000356922 ZCCHC2Q9C0B9 1178 aaKnown RBP3.91□□□□□ -1.78
LIG4-201ENST00000356922 SYNDIG1Q9H7V2 258 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 ROPN1Q9HAT0 212 aaPredicted RBP3.91□□□□□ -1.78
LIG4-201ENST00000356922 CAMSAP3Q9P1Y5 1249 aaPredicted RBP3.91□□□□□ -1.78
LIG4-201ENST00000356922 ATXN7L1Q9ULK2 861 aaPredicted RBP3.91□□□□□ -1.78
LIG4-201ENST00000356922 TDRKHQ9Y2W6 561 aaKnown RBP3.91□□□□□ -1.78
LIG4-201ENST00000356922 PCM1Q15154 2024 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 CPED1A4D0V7 1026 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 LIN7AO14910 233 aaPredicted RBP3.91□□□□□ -1.78
LIG4-201ENST00000356922 PCDHGA12O60330 932 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 KRT37O76014 449 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 KLHL2O95198 593 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 MT-ND3P03897 115 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 APOA4P06727 396 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 ALDH4A1P30038 563 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 SKIV2L2P42285 1042 aaKnown RBP3.91□□□□□ -1.78
LIG4-201ENST00000356922 ETV4P43268 484 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 TGFBIQ15582 683 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 PROX2Q3B8N5 592 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 C6orf132Q5T0Z8 1188 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 CHCHD2P9Q5T1J5 151 aaPredicted RBP3.91□□□□□ -1.78
LIG4-201ENST00000356922 N4BP2L1Q5TBK1 243 aaPredicted RBP3.91□□□□□ -1.78
LIG4-201ENST00000356922 SLCO6A1Q86UG4 719 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 OR52E1Q8NGJ3 308 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 OR5K2Q8NHB8 316 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 FLVCR1-AS1Q8TAF5 88 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 RHBDD1Q8TEB9 315 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 SETD7Q8WTS6 366 aaKnown RBP3.91□□□□□ -1.78
LIG4-201ENST00000356922 ZNF480Q8WV37 535 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 PDLIM5Q96HC4 596 aaKnown RBP3.91□□□□□ -1.78
LIG4-201ENST00000356922 PANX3Q96QZ0 392 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 FERD3LQ96RJ6 166 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 KLHL25Q9H0H3 589 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 ABCF3Q9NUQ8 709 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 EVA1BQ9NVM1 165 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 LRIT1Q9P2V4 623 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 XPR1Q9UBH6 696 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 SPASTQ9UBP0 616 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 ICKQ9UPZ9 632 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 DNMT3AQ9Y6K1 912 aaPredicted RBP3.91□□□□□ -1.78
LIG4-201ENST00000356922 HEATR5BQ9P2D3 2071 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 IGKV1-8A0A0C4DH67 115 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 E7ENX8 843 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 RGS16O15492 202 aaPredicted RBP3.91□□□□□ -1.78
LIG4-201ENST00000356922 DLX3O60479 287 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 GFRA3O60609 400 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 MTHFD1P11586 935 aaKnown RBP3.91□□□□□ -1.78
LIG4-201ENST00000356922 XRCC1P18887 633 aaPredicted RBP3.91□□□□□ -1.78
LIG4-201ENST00000356922 IMPA1P29218 277 aa3.91□□□□□ -1.78
LIG4-201ENST00000356922 PRDX3P30048 256 aaKnown RBP3.91□□□□□ -1.78
LIG4-201ENST00000356922 CCNFP41002 786 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms