RNA–Protein interactions for RNA: ENST00000345356.10

COL12A1-202, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL12A1, Length 5,886 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-202ENST00000345356 ASPNQ9BXN1 380 aa11.89□□□□□ -0.51
COL12A1-202ENST00000345356 ST6GALNAC4Q9H4F1 302 aa11.89□□□□□ -0.51
COL12A1-202ENST00000345356 QTRT2Q9H974 415 aaKnown RBP11.89□□□□□ -0.51
COL12A1-202ENST00000345356 SMURF1Q9HCE7 757 aa11.89□□□□□ -0.51
COL12A1-202ENST00000345356 PCDHB3Q9Y5E6 796 aa11.89□□□□□ -0.51
COL12A1-202ENST00000345356 DIP2AQ14689 1571 aa11.89□□□□□ -0.51
COL12A1-202ENST00000345356 ZNF701M0R085 212 aaPredicted RBP11.89□□□□□ -0.51
COL12A1-202ENST00000345356 TLR4O00206 839 aa11.89□□□□□ -0.51
COL12A1-202ENST00000345356 PITPNM1O00562 1244 aa11.89□□□□□ -0.51
COL12A1-202ENST00000345356 TPST2O60704 377 aa11.89□□□□□ -0.51
COL12A1-202ENST00000345356 ANXA4P09525 319 aaPredicted RBP11.89□□□□□ -0.51
COL12A1-202ENST00000345356 MAP2K3P46734 347 aa11.89□□□□□ -0.51
COL12A1-202ENST00000345356 AP1S2P56377 157 aa11.89□□□□□ -0.51
COL12A1-202ENST00000345356 TXNL4AP83876 142 aaKnown RBP11.89□□□□□ -0.51
COL12A1-202ENST00000345356 TARDBPQ13148 414 aaKnown RBP eCLIP11.89□□□□□ -0.51
COL12A1-202ENST00000345356 HNRNPA0Q13151 305 aaKnown RBP11.89□□□□□ -0.51
COL12A1-202ENST00000345356 UBAP2Q5T6F2 1119 aaKnown RBP11.89□□□□□ -0.51
COL12A1-202ENST00000345356 CGB2Q6NT52 195 aa11.89□□□□□ -0.51
COL12A1-202ENST00000345356 OR10H4Q8NGA5 316 aa11.89□□□□□ -0.51
COL12A1-202ENST00000345356 ZNF675Q8TD23 568 aa11.89□□□□□ -0.51
COL12A1-202ENST00000345356 BCAS3Q9H6U6 928 aa11.89□□□□□ -0.51
COL12A1-202ENST00000345356 BRD9Q9H8M2 597 aa11.89□□□□□ -0.51
COL12A1-202ENST00000345356 ZIM2Q9NZV7 527 aa11.89□□□□□ -0.51
COL12A1-202ENST00000345356 HCN3Q9P1Z3 774 aa11.89□□□□□ -0.51
COL12A1-202ENST00000345356 COQ4Q9Y3A0 265 aa11.89□□□□□ -0.51
COL12A1-202ENST00000345356 PAGE1O75459 146 aa11.89□□□□□ -0.51
COL12A1-202ENST00000345356 SLC25A14O95258 325 aaPredicted RBP11.89□□□□□ -0.51
COL12A1-202ENST00000345356 UBA1P22314 1058 aaKnown RBP11.89□□□□□ -0.51
COL12A1-202ENST00000345356 NCS1P62166 190 aa11.89□□□□□ -0.51
COL12A1-202ENST00000345356 PFKPQ01813 784 aa11.89□□□□□ -0.51
COL12A1-202ENST00000345356 RGS1Q08116 209 aa11.89□□□□□ -0.51
COL12A1-202ENST00000345356 ACOX1Q15067 660 aa11.89□□□□□ -0.51
COL12A1-202ENST00000345356 TATDN1Q6P1N9 297 aa11.89□□□□□ -0.51
COL12A1-202ENST00000345356 DCLRE1AQ6PJP8 1040 aa11.89□□□□□ -0.51
COL12A1-202ENST00000345356 TMEM17Q86X19 198 aa11.89□□□□□ -0.51
COL12A1-202ENST00000345356 INO80EQ8NBZ0 244 aaPredicted RBP11.89□□□□□ -0.51
COL12A1-202ENST00000345356 GPRC5AQ8NFJ5 357 aa11.89□□□□□ -0.51
COL12A1-202ENST00000345356 DNAJB3Q8WWF6 145 aa11.89□□□□□ -0.51
COL12A1-202ENST00000345356 NPLQ9BXD5 320 aaPredicted RBP11.89□□□□□ -0.51
COL12A1-202ENST00000345356 NUDT14O95848 222 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 GOT2P00505 430 aaKnown RBP11.88□□□□□ -0.51
COL12A1-202ENST00000345356 SLC5A2P31639 672 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 CDH5P33151 784 aaPredicted RBP11.88□□□□□ -0.51
COL12A1-202ENST00000345356 FNTBP49356 437 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 CNTN2Q02246 1040 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 PLA2G4EQ3MJ16 856 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 ANKRD26P1Q6NSI1 321 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 C7orf57Q8NEG2 295 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 CLP1Q92989 425 aaKnown RBP11.88□□□□□ -0.51
COL12A1-202ENST00000345356 PYURFQ96I23 114 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 MGME1Q9BQP7 344 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 COL20A1Q9P218 1284 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 MYOM1P52179 1685 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 MT-ND2P03891 347 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 ANXA3P12429 323 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 HDCP19113 662 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 CMASQ8NFW8 434 aaPredicted RBP11.88□□□□□ -0.51
COL12A1-202ENST00000345356 OR13J1Q8NGT2 312 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 MAELQ96JY0 434 aaKnown RBP11.88□□□□□ -0.51
COL12A1-202ENST00000345356 ANKRD60Q9BZ19 345 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 FBRSL1Q9HCM7 1045 aaKnown RBP11.88□□□□□ -0.51
COL12A1-202ENST00000345356 B4GALT4O60513 344 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 APOC1P02654 83 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 PRH1P02810 166 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 HIST1H2ABP04908 130 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 CFHP08603 1231 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 ARFIP1P53367 373 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 SPATS1Q496A3 300 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 PIGGQ5H8A4 983 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 KIAA0930Q6ICG6 404 aaPredicted RBP11.88□□□□□ -0.51
COL12A1-202ENST00000345356 APOBEC3HQ6NTF7 200 aaKnown RBP11.88□□□□□ -0.51
COL12A1-202ENST00000345356 HIST3H2AQ7L7L0 130 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 OXR1Q8N573 874 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 NKX2-3Q8TAU0 364 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 PPP1R13LQ8WUF5 828 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 HIST1H2ACQ93077 130 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 CDK15Q96Q40 435 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 COPS8Q99627 209 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 MCMBPQ9BTE3 642 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 TMED9Q9BVK6 235 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 TM6SF2Q9BZW4 377 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 ENAMQ9NRM1 1142 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 PIK3C2BO00750 1634 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 M0R036 132 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 RP2O75695 350 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 CXCR2P25025 360 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 CLCA4Q14CN2 919 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 HEPACAMQ14CZ8 416 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 TAF13Q15543 124 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 INTS6LQ5JSJ4 861 aaKnown RBP11.88□□□□□ -0.51
COL12A1-202ENST00000345356 BORAQ6PGQ7 559 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 PIWIL3Q7Z3Z3 882 aaKnown RBP11.88□□□□□ -0.51
COL12A1-202ENST00000345356 MRPS31Q92665 395 aaKnown RBP11.88□□□□□ -0.51
COL12A1-202ENST00000345356 AGO1Q9UL18 857 aaKnown RBP11.88□□□□□ -0.51
COL12A1-202ENST00000345356 FGBP02675 491 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 GRIA2P42262 883 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 GLUD2P49448 558 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 XKP51811 444 aa11.88□□□□□ -0.51
COL12A1-202ENST00000345356 GRSF1Q12849 480 aaKnown RBP eCLIP11.88□□□□□ -0.51
COL12A1-202ENST00000345356 RFTN2Q52LD8 501 aaPredicted RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms