RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 HK3P52790 923 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 DNAJB13P59910 316 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 NFKB2Q00653 900 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 ACOX1Q15067 660 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 SERPINA13PQ6UXR4 307 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 EFL1Q7Z2Z2 1120 aaKnown RBP11.7□□□□□ -0.54
USP1-201ENST00000339950 DNAJB7Q7Z6W7 309 aaPredicted RBP11.7□□□□□ -0.54
USP1-201ENST00000339950 PIK3C3Q8NEB9 887 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 ROPN1LQ96C74 230 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 ATOH8Q96SQ7 321 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 YME1L1Q96TA2 773 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 PCDHB3Q9Y5E6 796 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 A0A1B0GVM2 712 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 A8MU76 341 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 CCL16O15467 120 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 CBFA2T3O75081 653 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 CLCN2P51788 898 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 ARSFP54793 590 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 TPTEP56180 551 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 PTCHD3Q3KNS1 767 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 SULT1C3Q6IMI6 304 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 ZDHHC21Q8IVQ6 265 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 TIMMDC1Q9NPL8 285 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 TMEM181Q9P2C4 612 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 RAB23Q9ULC3 237 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 ARID1AO14497 2285 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 KPNA4O00629 521 aaPredicted RBP11.69□□□□□ -0.54
USP1-201ENST00000339950 INMTO95050 263 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 TACR1P25103 407 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 SHMT2P34897 504 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 CHI3L1P36222 383 aaPredicted RBP11.69□□□□□ -0.54
USP1-201ENST00000339950 TUFMP49411 452 aaKnown RBP11.69□□□□□ -0.54
USP1-201ENST00000339950 KRT33BQ14525 404 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 PYCR3Q53H96 274 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 TMPRSS11BQ86T26 416 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 ERI1Q8IV48 349 aaKnown RBP11.69□□□□□ -0.54
USP1-201ENST00000339950 CROCCP3Q8IVE0 287 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 GAB3Q8WWW8 586 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 TMEM125Q96AQ2 219 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 COX4I2Q96KJ9 171 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 KCNC2Q96PR1 638 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 C2orf49Q9BVC5 232 aaPredicted RBP11.69□□□□□ -0.54
USP1-201ENST00000339950 RNF208Q9H0X6 261 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 CSNK1G1Q9HCP0 422 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 PCTPQ9UKL6 214 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 FAM32AQ9Y421 112 aaKnown RBP11.69□□□□□ -0.54
USP1-201ENST00000339950 PGLSO95336 258 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 EPORP19235 508 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 IGFBP5P24593 272 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 VARSP26640 1264 aaKnown RBP11.69□□□□□ -0.54
USP1-201ENST00000339950 CTGFP29279 349 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 CTSOP43234 321 aaPredicted RBP11.69□□□□□ -0.54
USP1-201ENST00000339950 MAGEA12P43365 314 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 CDK9P50750 372 aaKnown RBP11.69□□□□□ -0.54
USP1-201ENST00000339950 SP3Q02447 781 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 TAF1AQ15573 450 aaPredicted RBP11.69□□□□□ -0.54
USP1-201ENST00000339950 HKDC1Q2TB90 917 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 CHERPQ8IWX8 916 aaKnown RBP11.69□□□□□ -0.54
USP1-201ENST00000339950 OR8H2Q8N162 312 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 CACTIN-AS1Q8N1I8 211 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 ZBTB2Q8N680 514 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 WFDC5Q8TCV5 224 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 MAGEH1Q9H213 219 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 PDE10AQ9Y233 779 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 H3BN98 237 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 TNFRSF10BO14763 440 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 BCKDKO14874 412 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 APOL3O95236 402 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 EPHB3P54753 998 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 DAG1Q14118 895 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 SUSD1Q6UWL2 747 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 EPHX4Q8IUS5 362 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 LRRC49Q8IUZ0 686 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 CLECL1Q8IZS7 167 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 RBFAQ8N0V3 343 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 TMEM132CQ8N3T6 1108 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 TMEM199Q8N511 208 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 POC5Q8NA72 575 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 PROKR1Q8TCW9 393 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 PGAP3Q96FM1 320 aaPredicted RBP11.69□□□□□ -0.54
USP1-201ENST00000339950 ASB2Q96Q27 587 aa11.69□□□□□ -0.54
USP1-201ENST00000339950 TCF3P15923 654 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 RFC2P35250 354 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 NNMTP40261 264 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 UGT3A2Q3SY77 523 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 MORN1Q5T089 497 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 ADGRF1Q5T601 910 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 Q6ZVL8 140 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 VANGL1Q8TAA9 524 aaPredicted RBP11.68□□□□□ -0.54
USP1-201ENST00000339950 DOK4Q8TEW6 326 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 TMEM159Q96B96 161 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 PPP3R2Q96LZ3 170 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 COQ7Q99807 217 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 TSEN34Q9BSV6 310 aaKnown RBP11.68□□□□□ -0.54
USP1-201ENST00000339950 TRPC4Q9UBN4 977 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 BBIP1A8MTZ0 92 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 H7C4K7 107 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 HAS3O00219 553 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 STC2O76061 302 aa11.68□□□□□ -0.54
USP1-201ENST00000339950 VIPP01282 170 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms