RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 OGFOD2Q6N063 350 aa13.06□□□□□ -0.32
HMGB1-202ENST00000339872 KIAA1161Q6NSJ0 714 aa13.06□□□□□ -0.32
HMGB1-202ENST00000339872 PAOXQ6QHF9 649 aa13.06□□□□□ -0.32
HMGB1-202ENST00000339872 OR2L2Q8NH16 312 aa13.06□□□□□ -0.32
HMGB1-202ENST00000339872 HM13Q8TCT9 377 aa13.06□□□□□ -0.32
HMGB1-202ENST00000339872 FAM131CQ96AQ9 280 aa13.06□□□□□ -0.32
HMGB1-202ENST00000339872 SIPA1Q96FS4 1042 aa13.06□□□□□ -0.32
HMGB1-202ENST00000339872 WDR26Q9H7D7 661 aa13.06□□□□□ -0.32
HMGB1-202ENST00000339872 ACTR8Q9H981 624 aa13.06□□□□□ -0.32
HMGB1-202ENST00000339872 KLQ9UEF7 1012 aa13.06□□□□□ -0.32
HMGB1-202ENST00000339872 TRPS1Q9UHF7 1281 aa13.06□□□□□ -0.32
HMGB1-202ENST00000339872 SLC22A14Q9Y267 594 aa13.06□□□□□ -0.32
HMGB1-202ENST00000339872 TRIOBPQ9H2D6 2365 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 C17orf113A0A1B0GUU1 675 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 RNGTTO60942 597 aaKnown RBP13.05□□□□□ -0.32
HMGB1-202ENST00000339872 CLDN9O95484 217 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 RAP1GDS1P52306 607 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 ATP6AP1LQ52LC2 224 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 NEK5Q6P3R8 708 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 XKR5Q6UX68 686 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 C11orf96Q7Z7L8 435 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 FAM124AQ86V42 546 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 MIER2Q8N344 545 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 KYQ8NBH2 561 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 TP53I13Q8NBR0 393 aaPredicted RBP13.05□□□□□ -0.32
HMGB1-202ENST00000339872 NPAS2Q99743 824 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 C1orf50Q9BV19 199 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 PHF7Q9BWX1 381 aaPredicted RBP13.05□□□□□ -0.32
HMGB1-202ENST00000339872 CD248Q9HCU0 757 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 DNAJC11Q9NVH1 559 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 COLQQ9Y215 455 aaPredicted RBP13.05□□□□□ -0.32
HMGB1-202ENST00000339872 TBC1D3DA0A087WVF3 549 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 TBC1D3IA0A087WXS9 549 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 TBC1D3EA0A087X179 549 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 TBC1D3KA0A087X1G2 549 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 A0A088AWK7 358 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 TBC1D3FA6NER0 549 aaPredicted RBP13.05□□□□□ -0.32
HMGB1-202ENST00000339872 MGAT4DA6NG13 374 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 TBC1D3LB9A6J9 549 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 CHUKO15111 745 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 TBC1D3HP0C7X1 549 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 IDO1P14902 403 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 CD72P21854 359 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 GPX3P22352 226 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 MAT2AP31153 395 aaKnown RBP13.05□□□□□ -0.32
HMGB1-202ENST00000339872 DIO3P55073 304 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 TBL3Q12788 808 aaKnown RBP13.05□□□□□ -0.32
HMGB1-202ENST00000339872 KPNB1Q14974 876 aaKnown RBP13.05□□□□□ -0.32
HMGB1-202ENST00000339872 RPS6KA2Q15349 733 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 NR6A1Q15406 480 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 TMEM259Q4ZIN3 620 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 WASHC2DQ5SRD0 308 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 TBC1D3GQ6DHY5 549 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 TBC1D3CQ6IPX1 549 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 Q6ZSR9 355 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 SPATA19Q7Z5L4 167 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 LRRTM4Q86VH4 590 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 TBC1D3Q8IZP1 549 aaPredicted RBP13.05□□□□□ -0.32
HMGB1-202ENST00000339872 DSELQ8IZU8 1212 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 CHCHD4Q8N4Q1 142 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 FNDC5Q8NAU1 212 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 MED8Q96G25 268 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 CCDC138Q96M89 665 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 C1QTNF2Q9BXJ5 285 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 TEX101Q9BY14 249 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 EFCAB1Q9HAE3 211 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 STOX2Q9P2F5 926 aaPredicted RBP13.05□□□□□ -0.32
HMGB1-202ENST00000339872 SCML1Q9UN30 329 aa13.05□□□□□ -0.32
HMGB1-202ENST00000339872 A0A1W2PPC1 479 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 SOX1O00570 391 aaPredicted RBP13.04□□□□□ -0.32
HMGB1-202ENST00000339872 ENTPD5O75356 428 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 CIB2O75838 187 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 WFS1O76024 890 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 C1orf105O95561 183 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 SNRPB2P08579 225 aaKnown RBP13.04□□□□□ -0.32
HMGB1-202ENST00000339872 ACADMP11310 421 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 PFN3P60673 137 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 ERVK-8P63133 956 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 GSTA3Q16772 222 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 MMEL1Q495T6 779 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 SLC44A4Q53GD3 710 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 C6orf136Q5SQH8 315 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 AGTRAPQ6RW13 159 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 C16orf89Q6UX73 402 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 KIAA1324Q6UXG2 1013 aaKnown RBP13.04□□□□□ -0.32
HMGB1-202ENST00000339872 FAM83HQ6ZRV2 1179 aaPredicted RBP13.04□□□□□ -0.32
HMGB1-202ENST00000339872 SFRP1Q8N474 314 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 WDR60Q8WVS4 1066 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 ATL1Q8WXF7 558 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 FAM3CQ92520 227 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 PKP4Q99569 1192 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 SLC17A9Q9BYT1 436 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 FARSBQ9NSD9 589 aaKnown RBP13.04□□□□□ -0.32
HMGB1-202ENST00000339872 SLC7A8Q9UHI5 535 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 PRUNE2Q8WUY3 3088 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 ULK1O75385 1050 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 PDE5AO76074 875 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 SLC16A8O95907 504 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 ACADVLP49748 655 aa13.04□□□□□ -0.32
HMGB1-202ENST00000339872 PLOD1Q02809 727 aaPredicted RBP13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms