RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 SP140Q13342 867 aa21.57■■□□□ 1.04
SDC3-202ENST00000339394 TSNQ15631 228 aaKnown RBP21.57■■□□□ 1.04
SDC3-202ENST00000339394 TTC23LQ6PF05 361 aa21.57■■□□□ 1.04
SDC3-202ENST00000339394 SBSNQ6UWP8 590 aa21.57■■□□□ 1.04
SDC3-202ENST00000339394 CLEC14AQ86T13 490 aa21.57■■□□□ 1.04
SDC3-202ENST00000339394 MAGEC3Q8TD91 643 aa21.57■■□□□ 1.04
SDC3-202ENST00000339394 SH3KBP1Q96B97 665 aa21.57■■□□□ 1.04
SDC3-202ENST00000339394 PTERQ96BW5 349 aa21.57■■□□□ 1.04
SDC3-202ENST00000339394 PGM2Q96G03 612 aa21.57■■□□□ 1.04
SDC3-202ENST00000339394 GPR78Q96P69 363 aa21.57■■□□□ 1.04
SDC3-202ENST00000339394 SLC38A3Q99624 504 aa21.57■■□□□ 1.04
SDC3-202ENST00000339394 CDC6Q99741 560 aa21.57■■□□□ 1.04
SDC3-202ENST00000339394 PARVBQ9HBI1 364 aa21.57■■□□□ 1.04
SDC3-202ENST00000339394 NMRAL1Q9HBL8 299 aa21.57■■□□□ 1.04
SDC3-202ENST00000339394 ZNF358Q9NW07 568 aa21.57■■□□□ 1.04
SDC3-202ENST00000339394 ZNF446Q9NWS9 450 aa21.57■■□□□ 1.04
SDC3-202ENST00000339394 CIDEBQ9UHD4 219 aa21.57■■□□□ 1.04
SDC3-202ENST00000339394 ZFC3H1O60293 1989 aaKnown RBP21.56■■□□□ 1.04
SDC3-202ENST00000339394 KRT87PA6NCN2 255 aa21.56■■□□□ 1.04
SDC3-202ENST00000339394 MAP2K7O14733 419 aa21.56■■□□□ 1.04
SDC3-202ENST00000339394 MAP4P27816 1152 aaKnown RBP21.56■■□□□ 1.04
SDC3-202ENST00000339394 GRB7Q14451 532 aa21.56■■□□□ 1.04
SDC3-202ENST00000339394 PHKG1Q16816 387 aa21.56■■□□□ 1.04
SDC3-202ENST00000339394 ZNF438Q7Z4V0 828 aa21.56■■□□□ 1.04
SDC3-202ENST00000339394 ISCA2Q86U28 154 aa21.56■■□□□ 1.04
SDC3-202ENST00000339394 FBXO15Q8NCQ5 510 aaPredicted RBP21.56■■□□□ 1.04
SDC3-202ENST00000339394 OR52E1Q8NGJ3 308 aa21.56■■□□□ 1.04
SDC3-202ENST00000339394 NAT6Q93015 286 aa21.56■■□□□ 1.04
SDC3-202ENST00000339394 KIAA1191Q96A73 305 aa21.56■■□□□ 1.04
SDC3-202ENST00000339394 RAD51AP1Q96B01 352 aa21.56■■□□□ 1.04
SDC3-202ENST00000339394 FAM122AQ96E09 287 aa21.56■■□□□ 1.04
SDC3-202ENST00000339394 LDHAL6BQ9BYZ2 381 aaPredicted RBP21.56■■□□□ 1.04
SDC3-202ENST00000339394 UCK1Q9HA47 277 aa21.56■■□□□ 1.04
SDC3-202ENST00000339394 PDE10AQ9Y233 779 aa21.56■■□□□ 1.04
SDC3-202ENST00000339394 TM4SF5O14894 197 aa21.55■■□□□ 1.04
SDC3-202ENST00000339394 TPBGLP0DKB5 382 aa21.55■■□□□ 1.04
SDC3-202ENST00000339394 PNLIPP16233 465 aa21.55■■□□□ 1.04
SDC3-202ENST00000339394 TFEBP19484 476 aa21.55■■□□□ 1.04
SDC3-202ENST00000339394 CYP2A7P20853 494 aa21.55■■□□□ 1.04
SDC3-202ENST00000339394 GLRBP48167 497 aa21.55■■□□□ 1.04
SDC3-202ENST00000339394 ACAP2Q15057 778 aa21.55■■□□□ 1.04
SDC3-202ENST00000339394 OR4D1Q15615 310 aa21.55■■□□□ 1.04
SDC3-202ENST00000339394 PPP1R3AQ16821 1122 aa21.55■■□□□ 1.04
SDC3-202ENST00000339394 TNFAIP8L3Q5GJ75 292 aa21.55■■□□□ 1.04
SDC3-202ENST00000339394 ADAMTSL2Q86TH1 951 aa21.55■■□□□ 1.04
SDC3-202ENST00000339394 SRRM1Q8IYB3 904 aaKnown RBP21.55■■□□□ 1.04
SDC3-202ENST00000339394 C4orf33Q8N1A6 199 aa21.55■■□□□ 1.04
SDC3-202ENST00000339394 JPH3Q8WXH2 748 aaPredicted RBP21.55■■□□□ 1.04
SDC3-202ENST00000339394 CCDC74AQ96AQ1 378 aa21.55■■□□□ 1.04
SDC3-202ENST00000339394 NRTNQ99748 197 aa21.55■■□□□ 1.04
SDC3-202ENST00000339394 TBC1D10AQ9BXI6 508 aa21.55■■□□□ 1.04
SDC3-202ENST00000339394 TFB2MQ9H5Q4 396 aaKnown RBP21.55■■□□□ 1.04
SDC3-202ENST00000339394 ALG9Q9H6U8 611 aa21.55■■□□□ 1.04
SDC3-202ENST00000339394 EVA1BQ9NVM1 165 aa21.55■■□□□ 1.04
SDC3-202ENST00000339394 PLAGL1Q9UM63 463 aa21.55■■□□□ 1.04
SDC3-202ENST00000339394 GOLGA6L10A6NI86 522 aa21.54■■□□□ 1.04
SDC3-202ENST00000339394 TNFSF14O43557 240 aa21.54■■□□□ 1.04
SDC3-202ENST00000339394 ACP1P24666 158 aa21.54■■□□□ 1.04
SDC3-202ENST00000339394 ALDH4A1P30038 563 aa21.54■■□□□ 1.04
SDC3-202ENST00000339394 GPR3P46089 330 aa21.54■■□□□ 1.04
SDC3-202ENST00000339394 NR1D2Q14995 579 aa21.54■■□□□ 1.04
SDC3-202ENST00000339394 PLCL1Q15111 1095 aa21.54■■□□□ 1.04
SDC3-202ENST00000339394 PERM1Q5SV97 790 aa21.54■■□□□ 1.04
SDC3-202ENST00000339394 EFL1Q7Z2Z2 1120 aaKnown RBP21.54■■□□□ 1.04
SDC3-202ENST00000339394 ALYREFQ86V81 257 aaKnown RBP21.54■■□□□ 1.04
SDC3-202ENST00000339394 DEFB124Q8NES8 71 aa21.54■■□□□ 1.04
SDC3-202ENST00000339394 IFI44Q8TCB0 444 aa21.54■■□□□ 1.04
SDC3-202ENST00000339394 MCOLN3Q8TDD5 553 aa21.54■■□□□ 1.04
SDC3-202ENST00000339394 NOVA2Q9UNW9 492 aaKnown RBP21.54■■□□□ 1.04
SDC3-202ENST00000339394 MYO1CO00159 1063 aa21.53■■□□□ 1.04
SDC3-202ENST00000339394 PLA2G5P39877 138 aa21.53■■□□□ 1.04
SDC3-202ENST00000339394 KCNC1P48547 511 aa21.53■■□□□ 1.04
SDC3-202ENST00000339394 SLC18A2Q05940 514 aa21.53■■□□□ 1.04
SDC3-202ENST00000339394 KLC3Q6P597 504 aa21.53■■□□□ 1.04
SDC3-202ENST00000339394 OR4E2Q8NGC2 313 aa21.53■■□□□ 1.04
SDC3-202ENST00000339394 OR9A1PQ8NGU1 263 aa21.53■■□□□ 1.04
SDC3-202ENST00000339394 STAG3L4Q8TBR4 150 aa21.53■■□□□ 1.04
SDC3-202ENST00000339394 LCN9Q8WX39 176 aa21.53■■□□□ 1.04
SDC3-202ENST00000339394 TSNARE1Q96NA8 513 aa21.53■■□□□ 1.04
SDC3-202ENST00000339394 PKP4Q99569 1192 aa21.53■■□□□ 1.04
SDC3-202ENST00000339394 CCDC3Q9BQI4 270 aa21.53■■□□□ 1.04
SDC3-202ENST00000339394 MENTQ9BUN1 341 aa21.53■■□□□ 1.04
SDC3-202ENST00000339394 SLC32A1Q9H598 525 aa21.53■■□□□ 1.04
SDC3-202ENST00000339394 TMBIM4Q9HC24 238 aa21.53■■□□□ 1.04
SDC3-202ENST00000339394 UTP6Q9NYH9 597 aaKnown RBP21.53■■□□□ 1.04
SDC3-202ENST00000339394 LILRA5A6NI73 299 aa21.53■■□□□ 1.04
SDC3-202ENST00000339394 SLC30A4O14863 429 aa21.53■■□□□ 1.04
SDC3-202ENST00000339394 SYF2O95926 243 aaKnown RBP21.53■■□□□ 1.04
SDC3-202ENST00000339394 ENO2P09104 434 aaPredicted RBP21.53■■□□□ 1.04
SDC3-202ENST00000339394 HIST1H2AGP0C0S8 130 aaPredicted RBP21.53■■□□□ 1.04
SDC3-202ENST00000339394 HIST1H2ADP20671 130 aa21.53■■□□□ 1.04
SDC3-202ENST00000339394 OR1D5P58170 312 aa21.53■■□□□ 1.04
SDC3-202ENST00000339394 TRIP6Q15654 476 aaKnown RBP21.53■■□□□ 1.04
SDC3-202ENST00000339394 TSNAXIP1Q2TAA8 658 aa21.53■■□□□ 1.04
SDC3-202ENST00000339394 CDHR3Q6ZTQ4 885 aa21.53■■□□□ 1.04
SDC3-202ENST00000339394 LCA5Q86VQ0 697 aa21.53■■□□□ 1.04
SDC3-202ENST00000339394 Q8N9G6 341 aaPredicted RBP21.53■■□□□ 1.04
SDC3-202ENST00000339394 RHEBL1Q8TAI7 183 aa21.53■■□□□ 1.04
SDC3-202ENST00000339394 HIST1H2AHQ96KK5 128 aa21.53■■□□□ 1.04
SDC3-202ENST00000339394 HIST1H2AJQ99878 128 aa21.53■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms