RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 EEF1B2P24534 225 aaKnown RBP3.12□□□□□ -1.91
HMGB1-201ENST00000326004 MC5RP33032 325 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 HSPA1LP34931 641 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 CHRNA7P36544 502 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 DCTP40126 519 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 PDX1P52945 283 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 LIMK1P53667 647 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 TPD52P55327 224 aaPredicted RBP3.12□□□□□ -1.91
HMGB1-201ENST00000326004 CX3CL1P78423 397 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 COG2Q14746 738 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 PSMD6Q15008 389 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 RBBP5Q15291 538 aaKnown RBP3.12□□□□□ -1.91
HMGB1-201ENST00000326004 VWC2Q2TAL6 325 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 FAM133BQ5BKY9 247 aaKnown RBP3.12□□□□□ -1.91
HMGB1-201ENST00000326004 TECRLQ5HYJ1 363 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 C1orf141Q5JVX7 400 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 STPG1Q5TH74 334 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 PLA2G4FQ68DD2 849 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 KRT39Q6A163 491 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 PRR27Q6MZM9 219 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 DET1Q7L5Y6 550 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 TRMT1LQ7Z2T5 733 aaKnown RBP3.12□□□□□ -1.91
HMGB1-201ENST00000326004 ZNF554Q86TJ5 538 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 NR2C2APQ86WQ0 139 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 DCUN1D3Q8IWE4 304 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 CIARTQ8N365 385 aaPredicted RBP3.12□□□□□ -1.91
HMGB1-201ENST00000326004 TRIML1Q8N9V2 468 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 KLHDC9Q8NEP7 349 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 OR6J1Q8NGC5 347 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 OR5M8Q8NGP6 311 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 ALG14Q96F25 216 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 SLC47A1Q96FL8 570 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 ZNF354BQ96LW1 612 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 LRRC3BQ96PB8 259 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 MYADMQ96S97 322 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 RTP3Q9BQQ7 232 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 SLC25A23Q9BV35 468 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 NUP85Q9BW27 656 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 ECHDC1Q9NTX5 307 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 COQ3Q9NZJ6 369 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 C5AR2Q9P296 337 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 ABT1Q9ULW3 272 aaKnown RBP3.12□□□□□ -1.91
HMGB1-201ENST00000326004 A0A1W2PPM1 405 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 OR6C76A6NM76 312 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 FAM72CH0Y354 149 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 TRIM77I1YAP6 450 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 GAPDHSO14556 408 aaPredicted RBP3.11□□□□□ -1.91
HMGB1-201ENST00000326004 PTGESO14684 152 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 CAVIN2O95810 425 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 PRSS1P07477 247 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 IGHV4-38-2P0DP08 117 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 LIFP15018 202 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 ERCC2P18074 760 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 EPHA2P29317 976 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 ASCL1P50553 236 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 ZNF41P51814 821 aaPredicted RBP3.11□□□□□ -1.91
HMGB1-201ENST00000326004 HNRNPKP61978 463 aaKnown RBP eCLIP3.11□□□□□ -1.91
HMGB1-201ENST00000326004 POU5F1Q01860 360 aaKnown RBP3.11□□□□□ -1.91
HMGB1-201ENST00000326004 RBPJQ06330 500 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 TNIP1Q15025 636 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 KLHL26Q53HC5 615 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 WDR38Q5JTN6 314 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 KRBOX4Q5JUW0 171 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 ELFN2Q5R3F8 820 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 FAM72AQ5TYM5 149 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 SLC35E4Q6ICL7 350 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 FAM72DQ6L9T8 149 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 MFSD12Q6NUT3 480 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 ANO5Q75V66 913 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 SLC26A9Q7LBE3 791 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 FAM72BQ86X60 149 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 NUDT13Q86X67 352 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 MFN1Q8IWA4 741 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 CFAP206Q8IYR0 622 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 PI4KAP1Q8N8J0 262 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 ZBTB8BQ8NAP8 495 aaPredicted RBP3.11□□□□□ -1.91
HMGB1-201ENST00000326004 SSMEM1Q8WWF3 244 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 HSD17B8Q92506 261 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 TM9SF4Q92544 642 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 SECISBP2LQ93073 1101 aaKnown RBP3.11□□□□□ -1.91
HMGB1-201ENST00000326004 VPS33AQ96AX1 596 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 MOB3AQ96BX8 217 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 DHX58Q96C10 678 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 LINC00615Q96LM1 132 aaPredicted RBP3.11□□□□□ -1.91
HMGB1-201ENST00000326004 NODALQ96S42 347 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 KRTAP1-5Q9BYS1 174 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 SERINC1Q9NRX5 453 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 ZNF701Q9NV72 531 aaPredicted RBP3.11□□□□□ -1.91
HMGB1-201ENST00000326004 PTTG2Q9NZH5 202 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 B3GAT1Q9P2W7 334 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 GIMAP2Q9UG22 337 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 TUBE1Q9UJT0 475 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 PADI2Q9Y2J8 665 aa3.11□□□□□ -1.91
HMGB1-201ENST00000326004 NEMP2A6NFY4 417 aa3.1□□□□□ -1.91
HMGB1-201ENST00000326004 URADA6NGE7 173 aa3.1□□□□□ -1.91
HMGB1-201ENST00000326004 IFITM10A6NMD0 228 aa3.1□□□□□ -1.91
HMGB1-201ENST00000326004 KRTAP29-1A8MX34 341 aaPredicted RBP3.1□□□□□ -1.91
HMGB1-201ENST00000326004 SPRY1O43609 319 aaPredicted RBP3.1□□□□□ -1.91
HMGB1-201ENST00000326004 SLC22A3O75751 556 aa3.1□□□□□ -1.91
HMGB1-201ENST00000326004 RECQL5O94762 991 aaPredicted RBP3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms