RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 LRTM1Q9HBL6 345 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 CCDC177Q9NQR7 707 aaPredicted RBP7.78□□□□□ -1.16
CIITA-201ENST00000324288 CLUHO75153 1309 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 TEX46H3BTG2 121 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 TLL1O43897 1013 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 LCN1P31025 176 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 CBLBQ13191 982 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 UGCGQ16739 394 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 GALNT7Q86SF2 657 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 GPR135Q8IZ08 494 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 PIWIL1Q96J94 861 aaKnown RBP7.78□□□□□ -1.16
CIITA-201ENST00000324288 FCRL2Q96LA5 508 aaPredicted RBP7.78□□□□□ -1.16
CIITA-201ENST00000324288 EVA1BQ9NVM1 165 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 DIP2AQ14689 1571 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 IL12BP29460 328 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 DUSP4Q13115 394 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 SEC23AQ15436 765 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 NOMO2Q5JPE7 1267 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 DCST1Q5T197 706 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 GPR158Q5T848 1215 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 CAPN13Q6MZZ7 669 aaPredicted RBP7.78□□□□□ -1.16
CIITA-201ENST00000324288 SPATA19Q7Z5L4 167 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 ZNF598Q86UK7 904 aaKnown RBP7.78□□□□□ -1.16
CIITA-201ENST00000324288 ZNF548Q8NEK5 533 aaPredicted RBP7.78□□□□□ -1.16
CIITA-201ENST00000324288 ZNF225Q9UK10 706 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 FARSAQ9Y285 508 aaKnown RBP7.78□□□□□ -1.16
CIITA-201ENST00000324288 MED31Q9Y3C7 131 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 HEATR5BQ9P2D3 2071 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 EP300Q09472 2414 aaPredicted RBP7.78□□□□□ -1.16
CIITA-201ENST00000324288 TSHRP16473 764 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 GJA1P17302 382 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 HK1P19367 917 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 MAPK12P53778 367 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 MTA1Q13330 715 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 CELF3Q5SZQ8 465 aaKnown RBP7.78□□□□□ -1.16
CIITA-201ENST00000324288 ANXA8L1Q5VT79 327 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 ALG1LQ6GMV1 187 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 CHSY3Q70JA7 882 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 ADAMTS15Q8TE58 950 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 GRHL3Q8TE85 626 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 C7orf50Q9BRJ6 194 aaKnown RBP7.78□□□□□ -1.16
CIITA-201ENST00000324288 ABHD16BQ9H3Z7 469 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 HIPK3Q9H422 1215 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 PTPRJQ12913 1337 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 JCADQ9P266 1359 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 MAPTP10636 758 aaKnown RBP7.78□□□□□ -1.16
CIITA-201ENST00000324288 BRSK1Q8TDC3 778 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 EBF2Q9HAK2 575 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 URADA6NGE7 173 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 ACVR2AP27037 513 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 ARL13AQ5H913 290 aaPredicted RBP7.78□□□□□ -1.16
CIITA-201ENST00000324288 PAQR7Q86WK9 346 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 ZDHHC21Q8IVQ6 265 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 CCDC107Q8WV48 283 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 DPCDQ9BVM2 203 aaPredicted RBP7.78□□□□□ -1.16
CIITA-201ENST00000324288 NDRG2Q9UN36 371 aaKnown RBP7.78□□□□□ -1.16
CIITA-201ENST00000324288 RABL2BQ9UNT1 228 aa7.78□□□□□ -1.16
CIITA-201ENST00000324288 NOP16Q9Y3C1 178 aaKnown RBP7.78□□□□□ -1.16
CIITA-201ENST00000324288 MYOCOSA0A1B0GUC4 107 aa7.77□□□□□ -1.16
CIITA-201ENST00000324288 A8MUA0 341 aa7.77□□□□□ -1.16
CIITA-201ENST00000324288 GADD45AP24522 165 aa7.77□□□□□ -1.16
CIITA-201ENST00000324288 OR1D2P34982 312 aa7.77□□□□□ -1.16
CIITA-201ENST00000324288 RPL3P39023 403 aaKnown RBP7.77□□□□□ -1.16
CIITA-201ENST00000324288 SLC10A7Q0GE19 358 aa7.77□□□□□ -1.16
CIITA-201ENST00000324288 ZBED5Q49AG3 693 aa7.77□□□□□ -1.16
CIITA-201ENST00000324288 KCTD9Q7L273 389 aa7.77□□□□□ -1.16
CIITA-201ENST00000324288 SNX29P2Q8IUI4 249 aa7.77□□□□□ -1.16
CIITA-201ENST00000324288 RGCCQ9H4X1 137 aa7.77□□□□□ -1.16
CIITA-201ENST00000324288 MRPL15Q9P015 296 aaKnown RBP7.77□□□□□ -1.16
CIITA-201ENST00000324288 GSKIPQ9P0R6 139 aa7.77□□□□□ -1.16
CIITA-201ENST00000324288 TBC1D14Q9P2M4 693 aa7.77□□□□□ -1.16
CIITA-201ENST00000324288 RPL26L1Q9UNX3 145 aaKnown RBP7.77□□□□□ -1.16
CIITA-201ENST00000324288 KCNIP3Q9Y2W7 256 aa7.77□□□□□ -1.16
CIITA-201ENST00000324288 LRRC72A6NJI9 287 aa7.77□□□□□ -1.17
CIITA-201ENST00000324288 EPHX1P07099 455 aa7.77□□□□□ -1.17
CIITA-201ENST00000324288 HSPA7P48741 367 aa7.77□□□□□ -1.17
CIITA-201ENST00000324288 FOXM1Q08050 763 aa7.77□□□□□ -1.17
CIITA-201ENST00000324288 MERTKQ12866 999 aa7.77□□□□□ -1.17
CIITA-201ENST00000324288 ARFRP1Q13795 201 aa7.77□□□□□ -1.17
CIITA-201ENST00000324288 MOB2Q70IA6 237 aa7.77□□□□□ -1.17
CIITA-201ENST00000324288 ZNF611Q8N823 705 aa7.77□□□□□ -1.17
CIITA-201ENST00000324288 GPR21Q99679 349 aa7.77□□□□□ -1.17
CIITA-201ENST00000324288 EBF4Q9BQW3 602 aa7.77□□□□□ -1.17
CIITA-201ENST00000324288 HERC2P3Q9BVR0 1158 aa7.77□□□□□ -1.17
CIITA-201ENST00000324288 C3orf14Q9HBI5 128 aa7.77□□□□□ -1.17
CIITA-201ENST00000324288 SAMD4AQ9UPU9 718 aaKnown RBP7.77□□□□□ -1.17
CIITA-201ENST00000324288 GLYATL1P3A0A0U1RQE8 302 aa7.77□□□□□ -1.17
CIITA-201ENST00000324288 J3QLW9 94 aa7.77□□□□□ -1.17
CIITA-201ENST00000324288 OR1F1O43749 312 aa7.77□□□□□ -1.17
CIITA-201ENST00000324288 CLIC3O95833 236 aa7.77□□□□□ -1.17
CIITA-201ENST00000324288 ZNF19P17023 458 aa7.77□□□□□ -1.17
CIITA-201ENST00000324288 DDX6P26196 483 aaKnown RBP eCLIP7.77□□□□□ -1.17
CIITA-201ENST00000324288 KRBOX4Q5JUW0 171 aa7.77□□□□□ -1.17
CIITA-201ENST00000324288 TPRG1LQ5T0D9 272 aa7.77□□□□□ -1.17
CIITA-201ENST00000324288 TCEAL6Q6IPX3 200 aa7.77□□□□□ -1.17
CIITA-201ENST00000324288 RBFAQ8N0V3 343 aa7.77□□□□□ -1.17
CIITA-201ENST00000324288 ZNF781Q8N8C0 355 aa7.77□□□□□ -1.17
CIITA-201ENST00000324288 ZSCAN1Q8NBB4 408 aa7.77□□□□□ -1.17
CIITA-201ENST00000324288 C11orf65Q8NCR3 313 aa7.77□□□□□ -1.17
CIITA-201ENST00000324288 C7orf34Q96L11 122 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms