RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 TRIM54Q9BYV2 358 aa17.96■□□□□ 0.46
USP39-201ENST00000323701 C1orf21Q9H246 121 aa17.96■□□□□ 0.46
USP39-201ENST00000323701 DENND2DQ9H6A0 471 aaPredicted RBP17.96■□□□□ 0.46
USP39-201ENST00000323701 INTS7Q9NVH2 962 aaKnown RBP17.96■□□□□ 0.46
USP39-201ENST00000323701 C2orf42Q9NWW7 574 aa17.96■□□□□ 0.46
USP39-201ENST00000323701 CCDC167Q9P0B6 97 aa17.96■□□□□ 0.46
USP39-201ENST00000323701 ZNHIT2Q9UHR6 403 aa17.96■□□□□ 0.46
USP39-201ENST00000323701 NDRG2Q9UN36 371 aaKnown RBP17.96■□□□□ 0.46
USP39-201ENST00000323701 GPR34Q9UPC5 381 aa17.96■□□□□ 0.46
USP39-201ENST00000323701 TBC1D3DA0A087WVF3 549 aa17.95■□□□□ 0.46
USP39-201ENST00000323701 TBC1D3IA0A087WXS9 549 aa17.95■□□□□ 0.46
USP39-201ENST00000323701 TBC1D3EA0A087X179 549 aa17.95■□□□□ 0.46
USP39-201ENST00000323701 TBC1D3KA0A087X1G2 549 aa17.95■□□□□ 0.46
USP39-201ENST00000323701 TBC1D3FA6NER0 549 aaPredicted RBP17.95■□□□□ 0.46
USP39-201ENST00000323701 TBC1D3LB9A6J9 549 aa17.95■□□□□ 0.46
USP39-201ENST00000323701 AIM2O14862 343 aa17.95■□□□□ 0.46
USP39-201ENST00000323701 ATP6V1G2O95670 118 aa17.95■□□□□ 0.46
USP39-201ENST00000323701 SLC16A8O95907 504 aa17.95■□□□□ 0.46
USP39-201ENST00000323701 TBC1D3HP0C7X1 549 aa17.95■□□□□ 0.46
USP39-201ENST00000323701 RPS21P63220 83 aaKnown RBP17.95■□□□□ 0.46
USP39-201ENST00000323701 MRPS21P82921 87 aaKnown RBP17.95■□□□□ 0.46
USP39-201ENST00000323701 GTF2H3Q13889 308 aa17.95■□□□□ 0.46
USP39-201ENST00000323701 TBC1D3GQ6DHY5 549 aa17.95■□□□□ 0.46
USP39-201ENST00000323701 TBC1D3CQ6IPX1 549 aa17.95■□□□□ 0.46
USP39-201ENST00000323701 IL27RAQ6UWB1 636 aa17.95■□□□□ 0.46
USP39-201ENST00000323701 FUNDC1Q8IVP5 155 aa17.95■□□□□ 0.46
USP39-201ENST00000323701 TBC1D3Q8IZP1 549 aaPredicted RBP17.95■□□□□ 0.46
USP39-201ENST00000323701 SFRP1Q8N474 314 aa17.95■□□□□ 0.46
USP39-201ENST00000323701 FLCNQ8NFG4 579 aa17.95■□□□□ 0.46
USP39-201ENST00000323701 OR2L2Q8NH16 312 aa17.95■□□□□ 0.46
USP39-201ENST00000323701 FAM3CQ92520 227 aa17.95■□□□□ 0.46
USP39-201ENST00000323701 MCUR1Q96AQ8 359 aa17.95■□□□□ 0.46
USP39-201ENST00000323701 RCN3Q96D15 328 aa17.95■□□□□ 0.46
USP39-201ENST00000323701 THTPAQ9BU02 230 aa17.95■□□□□ 0.46
USP39-201ENST00000323701 NTMT1Q9BV86 223 aa17.95■□□□□ 0.46
USP39-201ENST00000323701 A0A1W2PPC1 479 aa17.94■□□□□ 0.46
USP39-201ENST00000323701 PSMD12O00232 456 aaPredicted RBP17.94■□□□□ 0.46
USP39-201ENST00000323701 SLC31A1O15431 190 aa17.94■□□□□ 0.46
USP39-201ENST00000323701 THRAP10827 490 aa17.94■□□□□ 0.46
USP39-201ENST00000323701 GPX3P22352 226 aa17.94■□□□□ 0.46
USP39-201ENST00000323701 ACSL1P33121 698 aa17.94■□□□□ 0.46
USP39-201ENST00000323701 AP1S2P56377 157 aa17.94■□□□□ 0.46
USP39-201ENST00000323701 CYLC2Q14093 348 aaPredicted RBP17.94■□□□□ 0.46
USP39-201ENST00000323701 SQLEQ14534 574 aa17.94■□□□□ 0.46
USP39-201ENST00000323701 SMAD2Q15796 467 aaKnown RBP17.94■□□□□ 0.46
USP39-201ENST00000323701 AGKQ53H12 422 aa17.94■□□□□ 0.46
USP39-201ENST00000323701 MYLK4Q86YV6 388 aaPredicted RBP17.94■□□□□ 0.46
USP39-201ENST00000323701 RP9Q8TA86 221 aaKnown RBP17.94■□□□□ 0.46
USP39-201ENST00000323701 WDR60Q8WVS4 1066 aa17.94■□□□□ 0.46
USP39-201ENST00000323701 PKP4Q99569 1192 aa17.94■□□□□ 0.46
USP39-201ENST00000323701 CDX2Q99626 313 aaPredicted RBP17.94■□□□□ 0.46
USP39-201ENST00000323701 C1orf50Q9BV19 199 aa17.94■□□□□ 0.46
USP39-201ENST00000323701 WDR26Q9H7D7 661 aa17.94■□□□□ 0.46
USP39-201ENST00000323701 STOX2Q9P2F5 926 aaPredicted RBP17.94■□□□□ 0.46
USP39-201ENST00000323701 A0A088AWK7 358 aa17.94■□□□□ 0.46
USP39-201ENST00000323701 LIN7AO14910 233 aaPredicted RBP17.94■□□□□ 0.46
USP39-201ENST00000323701 SLC22A2O15244 555 aa17.94■□□□□ 0.46
USP39-201ENST00000323701 IGFALSP35858 605 aa17.94■□□□□ 0.46
USP39-201ENST00000323701 HNMTP50135 292 aa17.94■□□□□ 0.46
USP39-201ENST00000323701 FASTKQ14296 549 aaKnown RBP17.94■□□□□ 0.46
USP39-201ENST00000323701 E2F5Q15329 346 aa17.94■□□□□ 0.46
USP39-201ENST00000323701 TRMT11Q7Z4G4 463 aaKnown RBP17.94■□□□□ 0.46
USP39-201ENST00000323701 FBXL8Q96CD0 374 aa17.94■□□□□ 0.46
USP39-201ENST00000323701 RTKNQ9BST9 563 aa17.94■□□□□ 0.46
USP39-201ENST00000323701 CA5BQ9Y2D0 317 aa17.94■□□□□ 0.46
USP39-201ENST00000323701 CCL27Q9Y4X3 112 aa17.94■□□□□ 0.46
USP39-201ENST00000323701 MUC3AQ02505 3323 aa17.94■□□□□ 0.46
USP39-201ENST00000323701 MGAT4DA6NG13 374 aa17.93■□□□□ 0.46
USP39-201ENST00000323701 LATO43561 262 aa17.93■□□□□ 0.46
USP39-201ENST00000323701 C1orf105O95561 183 aa17.93■□□□□ 0.46
USP39-201ENST00000323701 LBPP18428 481 aa17.93■□□□□ 0.46
USP39-201ENST00000323701 IMPA1P29218 277 aa17.93■□□□□ 0.46
USP39-201ENST00000323701 ADSLP30566 484 aaPredicted RBP17.93■□□□□ 0.46
USP39-201ENST00000323701 SGCGQ13326 291 aa17.93■□□□□ 0.46
USP39-201ENST00000323701 SGO1Q5FBB7 561 aa17.93■□□□□ 0.46
USP39-201ENST00000323701 KIAA1324Q6UXG2 1013 aaKnown RBP17.93■□□□□ 0.46
USP39-201ENST00000323701 HORMAD1Q86X24 394 aa17.93■□□□□ 0.46
USP39-201ENST00000323701 ZNF514Q96K75 400 aaPredicted RBP17.93■□□□□ 0.46
USP39-201ENST00000323701 TEX37Q96LM6 180 aa17.93■□□□□ 0.46
USP39-201ENST00000323701 OR4K3Q96R72 315 aa17.93■□□□□ 0.46
USP39-201ENST00000323701 NPAS2Q99743 824 aa17.93■□□□□ 0.46
USP39-201ENST00000323701 OR52A5Q9H2C5 316 aa17.93■□□□□ 0.46
USP39-201ENST00000323701 PSMD13Q9UNM6 376 aa17.93■□□□□ 0.46
USP39-201ENST00000323701 C17orf113A0A1B0GUU1 675 aa17.93■□□□□ 0.46
USP39-201ENST00000323701 TCRBV21S2A2A0A5A6 115 aa17.93■□□□□ 0.46
USP39-201ENST00000323701 FBP2O00757 339 aa17.93■□□□□ 0.46
USP39-201ENST00000323701 ENTPD5O75356 428 aa17.93■□□□□ 0.46
USP39-201ENST00000323701 CHEK2O96017 543 aa17.93■□□□□ 0.46
USP39-201ENST00000323701 GABRG2P18507 467 aa17.93■□□□□ 0.46
USP39-201ENST00000323701 MAP4P27816 1152 aaKnown RBP17.93■□□□□ 0.46
USP39-201ENST00000323701 ACADLP28330 430 aa17.93■□□□□ 0.46
USP39-201ENST00000323701 NUDT2P50583 147 aa17.93■□□□□ 0.46
USP39-201ENST00000323701 CPSF6Q16630 551 aaKnown RBP eCLIP17.93■□□□□ 0.46
USP39-201ENST00000323701 C6orf136Q5SQH8 315 aa17.93■□□□□ 0.46
USP39-201ENST00000323701 METTL2BQ6P1Q9 378 aaKnown RBP17.93■□□□□ 0.46
USP39-201ENST00000323701 AGTRAPQ6RW13 159 aa17.93■□□□□ 0.46
USP39-201ENST00000323701 LRRC70Q7Z2Q7 622 aa17.93■□□□□ 0.46
USP39-201ENST00000323701 ULK2Q8IYT8 1036 aa17.93■□□□□ 0.46
USP39-201ENST00000323701 DEFB107AQ8IZN7 70 aa17.93■□□□□ 0.46
USP39-201ENST00000323701 MTFMTQ96DP5 389 aaKnown RBP17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms