RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 DMPKQ09013 629 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 TRAF3Q13114 568 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 DGCR6Q14129 220 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 ACOX1Q15067 660 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 RUNDC3AQ59EK9 446 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 ZRANB3Q5FWF4 1079 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 VASH1Q7L8A9 365 aaPredicted RBP13.17□□□□□ -0.3
SKA3-202ENST00000314759 PAGE2Q7Z2X7 111 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 B3GNT8Q7Z7M8 397 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 GALNT5Q7Z7M9 940 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 KRTCAP2Q8N6L1 136 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 TTC16Q8NEE8 873 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 OR7D4Q8NG98 312 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 NETO1Q8TDF5 533 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 NCLNQ969V3 563 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 HOXD1Q9GZZ0 328 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 MIR1-1HGQ9H1L0 117 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 NECTIN3Q9NQS3 549 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 ABCB10Q9NRK6 738 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.17□□□□□ -0.3
SKA3-202ENST00000314759 VNN3Q9NY84 501 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 PADI3Q9ULW8 664 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 VPS9D1Q9Y2B5 631 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 PCDHGA10Q9Y5H3 936 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 SLC12A8A0AV02 714 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 MYADML2A6NDP7 307 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 TTC34A8MYJ7 566 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 ARVCFO00192 962 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 SERPINA1P01009 418 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 PGRP06401 933 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 RETP07949 1114 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 LPOP22079 712 aaPredicted RBP13.17□□□□□ -0.3
SKA3-202ENST00000314759 NRIP1P48552 1158 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 CLCN7P51798 805 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 VAC14Q08AM6 782 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 NPTX1Q15818 432 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 FAM110CQ1W6H9 321 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 C10orf120Q5SQS8 335 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 LAIR1Q6GTX8 287 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 GDF6Q6KF10 455 aaPredicted RBP13.17□□□□□ -0.3
SKA3-202ENST00000314759 MILR1Q7Z6M3 343 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 CYP4Z1Q86W10 505 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 ARMC8Q8IUR7 673 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 MICU2Q8IYU8 434 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 TTC9BQ8N6N2 239 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 TRIB2Q92519 343 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 RPL3LQ92901 407 aaKnown RBP13.17□□□□□ -0.3
SKA3-202ENST00000314759 YIPF6Q96EC8 236 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 PPP3R2Q96LZ3 170 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 ZBTB18Q99592 522 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 BCL7BQ9BQE9 202 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 SGIP1Q9BQI5 828 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 RHNO1Q9BSD3 238 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 TP63Q9H3D4 680 aaPredicted RBP13.17□□□□□ -0.3
SKA3-202ENST00000314759 KAT8Q9H7Z6 458 aaKnown RBP13.17□□□□□ -0.3
SKA3-202ENST00000314759 FARSBQ9NSD9 589 aaKnown RBP13.17□□□□□ -0.3
SKA3-202ENST00000314759 IFT52Q9Y366 437 aa13.17□□□□□ -0.3
SKA3-202ENST00000314759 B4GALT3O60512 393 aa13.16□□□□□ -0.3
SKA3-202ENST00000314759 OTCP00480 354 aa13.16□□□□□ -0.3
SKA3-202ENST00000314759 SPNP16150 400 aa13.16□□□□□ -0.3
SKA3-202ENST00000314759 CD40LGP29965 261 aa13.16□□□□□ -0.3
SKA3-202ENST00000314759 SEPHS1P49903 392 aa13.16□□□□□ -0.3
SKA3-202ENST00000314759 HMGCS1Q01581 520 aa13.16□□□□□ -0.3
SKA3-202ENST00000314759 IL18R1Q13478 541 aa13.16□□□□□ -0.3
SKA3-202ENST00000314759 DGUOKQ16854 277 aa13.16□□□□□ -0.3
SKA3-202ENST00000314759 LRIT3Q3SXY7 679 aa13.16□□□□□ -0.3
SKA3-202ENST00000314759 ZC3H12BQ5HYM0 836 aaKnown RBP13.16□□□□□ -0.3
SKA3-202ENST00000314759 SBSNQ6UWP8 590 aa13.16□□□□□ -0.3
SKA3-202ENST00000314759 CYP2U1Q7Z449 544 aa13.16□□□□□ -0.3
SKA3-202ENST00000314759 LPCAT1Q8NF37 534 aa13.16□□□□□ -0.3
SKA3-202ENST00000314759 DYNC2LI1Q8TCX1 351 aa13.16□□□□□ -0.3
SKA3-202ENST00000314759 PSKH2Q96QS6 385 aa13.16□□□□□ -0.3
SKA3-202ENST00000314759 ZNF300Q96RE9 604 aaPredicted RBP13.16□□□□□ -0.3
SKA3-202ENST00000314759 BARD1Q99728 777 aaKnown RBP13.16□□□□□ -0.3
SKA3-202ENST00000314759 ZFP14Q9HCL3 533 aa13.16□□□□□ -0.3
SKA3-202ENST00000314759 THG1LQ9NWX6 298 aaKnown RBP13.16□□□□□ -0.3
SKA3-202ENST00000314759 PCDHB14Q9Y5E9 798 aa13.16□□□□□ -0.3
SKA3-202ENST00000314759 TNPO3Q9Y5L0 923 aaKnown RBP13.16□□□□□ -0.3
SKA3-202ENST00000314759 A0A0U1RQF3 1178 aa13.16□□□□□ -0.3
SKA3-202ENST00000314759 FFAR3O14843 346 aa13.16□□□□□ -0.3
SKA3-202ENST00000314759 GPR42O15529 346 aa13.16□□□□□ -0.3
SKA3-202ENST00000314759 TSPAN3O60637 253 aa13.16□□□□□ -0.3
SKA3-202ENST00000314759 IGLV3-27P01718 113 aa13.16□□□□□ -0.3
SKA3-202ENST00000314759 SERPINB1P30740 379 aa13.16□□□□□ -0.3
SKA3-202ENST00000314759 CLCN4P51793 760 aa13.16□□□□□ -0.3
SKA3-202ENST00000314759 SLC35A2P78381 396 aa13.16□□□□□ -0.3
SKA3-202ENST00000314759 SIM2Q14190 667 aaPredicted RBP13.16□□□□□ -0.3
SKA3-202ENST00000314759 LAPTM4AQ15012 233 aa13.16□□□□□ -0.3
SKA3-202ENST00000314759 P2RY8Q86VZ1 359 aa13.16□□□□□ -0.3
SKA3-202ENST00000314759 HIPK1Q86Z02 1210 aa13.16□□□□□ -0.3
SKA3-202ENST00000314759 C8orf48Q96LL4 319 aa13.16□□□□□ -0.3
SKA3-202ENST00000314759 DPY30Q9C005 99 aa13.16□□□□□ -0.3
SKA3-202ENST00000314759 DUSP21Q9H596 190 aa13.16□□□□□ -0.3
SKA3-202ENST00000314759 NSUN3Q9H649 340 aaKnown RBP13.16□□□□□ -0.3
SKA3-202ENST00000314759 MAGIXQ9H6Y5 334 aa13.16□□□□□ -0.3
SKA3-202ENST00000314759 PCDHB8Q9UN66 801 aa13.16□□□□□ -0.3
SKA3-202ENST00000314759 EIF3LQ9Y262 564 aaKnown RBP13.16□□□□□ -0.3
SKA3-202ENST00000314759 PCDHGC4Q9Y5F7 938 aa13.16□□□□□ -0.3
SKA3-202ENST00000314759 ORC6Q9Y5N6 252 aa13.16□□□□□ -0.3
SKA3-202ENST00000314759 TDRD15B5MCY1 1934 aaKnown RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms