RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 XPNPEP1Q9NQW7 623 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 CLCF1Q9UBD9 225 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 MFHAS1Q9Y4C4 1052 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 CEP170Q5SW79 1584 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 PIK3C2GO75747 1445 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 CLUHO75153 1309 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 FAM187AA6NFU0 413 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 ANKDD1BA6NHY2 528 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 MRASO14807 208 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 AP5Z1O43299 807 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 ICMTO60725 284 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 PAGE1O75459 146 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 PAK4O96013 591 aaPredicted RBP7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 M6PRP20645 277 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 BMI1P35226 326 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 IGFALSP35858 605 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 SLC5A3P53794 718 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 MLLT10P55197 1068 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 MAXP61244 160 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 FOLH1Q04609 750 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 NR1I3Q14994 352 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 UPP1Q16831 310 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 TTC32Q5I0X7 151 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 NBPF12Q5TAG4 269 aaPredicted RBP7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 ZC3H14Q6PJT7 736 aaKnown RBP7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 USP43Q70EL4 1123 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 FAM126BQ8IXS8 530 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 LILRB2Q8N423 598 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 OR4N2Q8NGD1 307 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 TRMT10AQ8TBZ6 339 aaKnown RBP7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 SLC25A44Q96H78 314 aaPredicted RBP7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 NODALQ96S42 347 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 TBX5Q99593 518 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 ZCCHC2Q9C0B9 1178 aaKnown RBP7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 C8orf33Q9H7E9 229 aaPredicted RBP7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 ROPN1Q9HAT0 212 aaPredicted RBP7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 NIT2Q9NQR4 276 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 EXTL2Q9UBQ6 330 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 CYP3A7-CYP3A51PA0A087WV96 503 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 TBX19O60806 448 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 AKR7A3O95154 331 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 CYP2E1P05181 493 aaPredicted RBP7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 ITGAVP06756 1048 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 ANXA8P13928 327 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 CYP3A7P24462 503 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 HPCAL1P37235 193 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 GRIA3P42263 894 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 DPCR1Q3MIW9 517 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 TMEM31Q5JXX7 168 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 ANXA8L1Q5VT79 327 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 TRMT10BQ6PF06 316 aaKnown RBP7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 ZNF517Q6ZMY9 492 aaPredicted RBP7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 EEPD1Q7L9B9 569 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 MILR1Q7Z6M3 343 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 TMEM185AQ8NFB2 350 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 OR2M7Q8NG81 312 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 ZNF669Q96BR6 464 aaPredicted RBP7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 REEP6Q96HR9 211 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 SLC6A7Q99884 636 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 TTPALQ9BTX7 342 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 ACTR6Q9GZN1 396 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 TMPRSS5Q9H3S3 457 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 KLHL42Q9P2K6 505 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 GSC2O15499 205 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 DIRAS3O95661 229 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 EPHA4P54764 986 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 EMP3P54852 163 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 ZNF280AP59817 542 aaPredicted RBP7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 GK2Q14410 553 aaPredicted RBP7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 ARMC12Q5T9G4 340 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 RNF220Q5VTB9 566 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 LYSMD4Q5XG99 296 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 VSTM1Q6UX27 236 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 CFAP77Q6ZQR2 320 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 REC114Q7Z4M0 266 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 ZNF440Q8IYI8 595 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 LMNTD1Q8N9Z9 388 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 OR1E3Q8WZA6 343 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 TM9SF4Q92544 642 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 PNPLA2Q96AD5 504 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 BTBD10Q9BSF8 475 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 PDP1Q9P0J1 537 aaPredicted RBP7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 SRRDQ9UH36 339 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 TNFSF13BQ9Y275 285 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 SQORQ9Y6N5 450 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 DPPA5A6NC42 116 aa7.51□□□□□ -1.21
LIMCH1-201ENST00000313860 C2orf72A6NCS6 295 aa7.51□□□□□ -1.21
LIMCH1-201ENST00000313860 FAM196BA6NMK8 535 aa7.51□□□□□ -1.21
LIMCH1-201ENST00000313860 SLC31A1O15431 190 aa7.51□□□□□ -1.21
LIMCH1-201ENST00000313860 TRAF3IP2O43734 574 aaPredicted RBP7.51□□□□□ -1.21
LIMCH1-201ENST00000313860 CYP1A1P04798 512 aaPredicted RBP7.51□□□□□ -1.21
LIMCH1-201ENST00000313860 CKBP12277 381 aa7.51□□□□□ -1.21
LIMCH1-201ENST00000313860 MSX2P35548 267 aaPredicted RBP7.51□□□□□ -1.21
LIMCH1-201ENST00000313860 ECI1P42126 302 aa7.51□□□□□ -1.21
LIMCH1-201ENST00000313860 SLC26A2P50443 739 aa7.51□□□□□ -1.21
LIMCH1-201ENST00000313860 CDH13P55290 713 aa7.51□□□□□ -1.21
LIMCH1-201ENST00000313860 FAAP100Q0VG06 881 aa7.51□□□□□ -1.21
LIMCH1-201ENST00000313860 SF1Q15637 639 aaKnown RBP7.51□□□□□ -1.21
LIMCH1-201ENST00000313860 SMTNL2Q2TAL5 461 aa7.51□□□□□ -1.21
LIMCH1-201ENST00000313860 TTLL9Q3SXZ7 439 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms