RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 ZNF140P52738 457 aaPredicted RBP14.27□□□□□ -0.13
CCDC88B-201ENST00000301897 NKAIN1Q4KMZ8 207 aa14.27□□□□□ -0.13
CCDC88B-201ENST00000301897 KATNAL2Q8IYT4 538 aa14.27□□□□□ -0.13
CCDC88B-201ENST00000301897 NAT14Q8WUY8 206 aa14.27□□□□□ -0.13
CCDC88B-201ENST00000301897 DLG3Q92796 817 aa14.27□□□□□ -0.13
CCDC88B-201ENST00000301897 VPS50Q96JG6 964 aa14.27□□□□□ -0.13
CCDC88B-201ENST00000301897 WDR77Q9BQA1 342 aaPredicted RBP14.27□□□□□ -0.13
CCDC88B-201ENST00000301897 HGH1Q9BTY7 390 aa14.27□□□□□ -0.13
CCDC88B-201ENST00000301897 OR6C2Q9NZP2 312 aa14.27□□□□□ -0.13
CCDC88B-201ENST00000301897 DOCK10Q96BY6 2186 aa14.27□□□□□ -0.13
CCDC88B-201ENST00000301897 A0A0J9YY10 115 aa14.26□□□□□ -0.13
CCDC88B-201ENST00000301897 SYCE3A1L190 88 aa14.26□□□□□ -0.13
CCDC88B-201ENST00000301897 H3BMH7 237 aa14.26□□□□□ -0.13
CCDC88B-201ENST00000301897 H7C0C1 242 aa14.26□□□□□ -0.13
CCDC88B-201ENST00000301897 APOC4-APOC2K7ER74 178 aa14.26□□□□□ -0.13
CCDC88B-201ENST00000301897 AGPSO00116 658 aa14.26□□□□□ -0.13
CCDC88B-201ENST00000301897 ZNF189O75820 626 aaPredicted RBP14.26□□□□□ -0.13
CCDC88B-201ENST00000301897 AP2A2O94973 939 aa14.26□□□□□ -0.13
CCDC88B-201ENST00000301897 APOC2P02655 101 aa14.26□□□□□ -0.13
CCDC88B-201ENST00000301897 ATP5OP48047 213 aa14.26□□□□□ -0.13
CCDC88B-201ENST00000301897 PLOD1Q02809 727 aaPredicted RBP14.26□□□□□ -0.13
CCDC88B-201ENST00000301897 LLGL1Q15334 1064 aa14.26□□□□□ -0.13
CCDC88B-201ENST00000301897 ZNF658BQ4V348 819 aaPredicted RBP14.26□□□□□ -0.13
CCDC88B-201ENST00000301897 IRAK1BP1Q5VVH5 260 aa14.26□□□□□ -0.13
CCDC88B-201ENST00000301897 CCDC50Q8IVM0 306 aa14.26□□□□□ -0.13
CCDC88B-201ENST00000301897 PHC3Q8NDX5 983 aa14.26□□□□□ -0.13
CCDC88B-201ENST00000301897 PPP4R1Q8TF05 950 aa14.26□□□□□ -0.13
CCDC88B-201ENST00000301897 RANBP9Q96S59 729 aa14.26□□□□□ -0.13
CCDC88B-201ENST00000301897 NDC1Q9BTX1 674 aa14.26□□□□□ -0.13
CCDC88B-201ENST00000301897 KLHL25Q9H0H3 589 aa14.26□□□□□ -0.13
CCDC88B-201ENST00000301897 XKR8Q9H6D3 395 aa14.26□□□□□ -0.13
CCDC88B-201ENST00000301897 NHEJ1Q9H9Q4 299 aaPredicted RBP14.26□□□□□ -0.13
CCDC88B-201ENST00000301897 SPTLC3Q9NUV7 552 aa14.26□□□□□ -0.13
CCDC88B-201ENST00000301897 HYOU1Q9Y4L1 999 aa14.26□□□□□ -0.13
CCDC88B-201ENST00000301897 NUP210LQ5VU65 1888 aa14.26□□□□□ -0.13
CCDC88B-201ENST00000301897 PCSK5Q92824 1860 aa14.26□□□□□ -0.13
CCDC88B-201ENST00000301897 CSMD1Q96PZ7 3565 aa14.26□□□□□ -0.13
CCDC88B-201ENST00000301897 TRBV5-4A0A0C4DH59 114 aa14.25□□□□□ -0.13
CCDC88B-201ENST00000301897 LIN7AO14910 233 aaPredicted RBP14.25□□□□□ -0.13
CCDC88B-201ENST00000301897 HNRNPRO43390 633 aaKnown RBP14.25□□□□□ -0.13
CCDC88B-201ENST00000301897 CBFA2T2O43439 604 aa14.25□□□□□ -0.13
CCDC88B-201ENST00000301897 PIM1P11309 404 aaPredicted RBP14.25□□□□□ -0.13
CCDC88B-201ENST00000301897 UGT2B7P16662 529 aa14.25□□□□□ -0.13
CCDC88B-201ENST00000301897 ITGA3P26006 1051 aa14.25□□□□□ -0.13
CCDC88B-201ENST00000301897 ACRV1P26436 265 aa14.25□□□□□ -0.13
CCDC88B-201ENST00000301897 PDHA2P29803 388 aa14.25□□□□□ -0.13
CCDC88B-201ENST00000301897 HADHBP55084 474 aaKnown RBP14.25□□□□□ -0.13
CCDC88B-201ENST00000301897 PRKG2Q13237 762 aa14.25□□□□□ -0.13
CCDC88B-201ENST00000301897 CCDC181Q5TID7 509 aa14.25□□□□□ -0.13
CCDC88B-201ENST00000301897 C1orf189Q5VU69 101 aa14.25□□□□□ -0.13
CCDC88B-201ENST00000301897 C1QL3Q5VWW1 255 aa14.25□□□□□ -0.13
CCDC88B-201ENST00000301897 MRPL14Q6P1L8 145 aaKnown RBP14.25□□□□□ -0.13
CCDC88B-201ENST00000301897 BBS12Q6ZW61 710 aa14.25□□□□□ -0.13
CCDC88B-201ENST00000301897 PPP1R32Q7Z5V6 425 aa14.25□□□□□ -0.13
CCDC88B-201ENST00000301897 CUZD1Q86UP6 607 aa14.25□□□□□ -0.13
CCDC88B-201ENST00000301897 TBC1D21Q8IYX1 336 aa14.25□□□□□ -0.13
CCDC88B-201ENST00000301897 OR13C4Q8NGS5 318 aa14.25□□□□□ -0.13
CCDC88B-201ENST00000301897 INPP5DQ92835 1189 aa14.25□□□□□ -0.13
CCDC88B-201ENST00000301897 FKBP10Q96AY3 582 aa14.25□□□□□ -0.13
CCDC88B-201ENST00000301897 HAUS1Q96CS2 278 aa14.25□□□□□ -0.13
CCDC88B-201ENST00000301897 MOCOSQ96EN8 888 aa14.25□□□□□ -0.13
CCDC88B-201ENST00000301897 CHP1Q99653 195 aa14.25□□□□□ -0.13
CCDC88B-201ENST00000301897 ARNT2Q9HBZ2 717 aa14.25□□□□□ -0.13
CCDC88B-201ENST00000301897 FAM60AQ9NP50 221 aa14.25□□□□□ -0.13
CCDC88B-201ENST00000301897 IRAK4Q9NWZ3 460 aa14.25□□□□□ -0.13
CCDC88B-201ENST00000301897 PLCL2Q9UPR0 1127 aa14.25□□□□□ -0.13
CCDC88B-201ENST00000301897 ICKQ9UPZ9 632 aa14.25□□□□□ -0.13
CCDC88B-201ENST00000301897 CDYLQ9Y232 598 aa14.25□□□□□ -0.13
CCDC88B-201ENST00000301897 ALG6Q9Y672 507 aa14.25□□□□□ -0.13
CCDC88B-201ENST00000301897 H7C0S8 307 aa14.24□□□□□ -0.13
CCDC88B-201ENST00000301897 CHRM5P08912 532 aaPredicted RBP14.24□□□□□ -0.13
CCDC88B-201ENST00000301897 MMP11P24347 488 aa14.24□□□□□ -0.13
CCDC88B-201ENST00000301897 ELAVL4P26378 380 aaKnown RBP14.24□□□□□ -0.13
CCDC88B-201ENST00000301897 RBL1P28749 1068 aa14.24□□□□□ -0.13
CCDC88B-201ENST00000301897 MC4RP32245 332 aa14.24□□□□□ -0.13
CCDC88B-201ENST00000301897 TSFMP43897 325 aaKnown RBP14.24□□□□□ -0.13
CCDC88B-201ENST00000301897 GABRA4P48169 554 aa14.24□□□□□ -0.13
CCDC88B-201ENST00000301897 ARSFP54793 590 aa14.24□□□□□ -0.13
CCDC88B-201ENST00000301897 COPS2P61201 443 aa14.24□□□□□ -0.13
CCDC88B-201ENST00000301897 NAA30Q147X3 362 aaPredicted RBP14.24□□□□□ -0.13
CCDC88B-201ENST00000301897 KIR2DS3Q14952 304 aa14.24□□□□□ -0.13
CCDC88B-201ENST00000301897 SLC5A12Q1EHB4 618 aa14.24□□□□□ -0.13
CCDC88B-201ENST00000301897 AGAP7PQ5VUJ5 663 aa14.24□□□□□ -0.13
CCDC88B-201ENST00000301897 PRAMEF13Q5VWM6 474 aa14.24□□□□□ -0.13
CCDC88B-201ENST00000301897 B3GNTL1Q67FW5 361 aaPredicted RBP14.24□□□□□ -0.13
CCDC88B-201ENST00000301897 FCRL6Q6DN72 434 aa14.24□□□□□ -0.13
CCDC88B-201ENST00000301897 UNC5AQ6ZN44 842 aa14.24□□□□□ -0.13
CCDC88B-201ENST00000301897 SERPINA9Q86WD7 417 aa14.24□□□□□ -0.13
CCDC88B-201ENST00000301897 TMTC1Q8IUR5 882 aa14.24□□□□□ -0.13
CCDC88B-201ENST00000301897 CDKL3Q8IVW4 592 aaPredicted RBP14.24□□□□□ -0.13
CCDC88B-201ENST00000301897 ZNF655Q8N720 491 aaPredicted RBP14.24□□□□□ -0.13
CCDC88B-201ENST00000301897 AGAP4Q96P64 663 aa14.24□□□□□ -0.13
CCDC88B-201ENST00000301897 OR2A14Q96R47 310 aa14.24□□□□□ -0.13
CCDC88B-201ENST00000301897 APOL2Q9BQE5 337 aa14.24□□□□□ -0.13
CCDC88B-201ENST00000301897 GORASP1Q9BQQ3 440 aa14.24□□□□□ -0.13
CCDC88B-201ENST00000301897 SPRTNQ9H040 489 aaPredicted RBP14.24□□□□□ -0.13
CCDC88B-201ENST00000301897 FAM96AQ9H5X1 160 aa14.24□□□□□ -0.13
CCDC88B-201ENST00000301897 RUBCNLQ9H714 662 aa14.24□□□□□ -0.13
CCDC88B-201ENST00000301897 WDR54Q9H977 334 aa14.24□□□□□ -0.13
CCDC88B-201ENST00000301897 MRM3Q9HC36 420 aaKnown RBP14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms