RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 ASB11Q8WXH4 323 aa12.39□□□□□ -0.43
SS18-202ENST00000269138 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.39□□□□□ -0.436e-8■■■■□ 26.7
SS18-202ENST00000269138 FOPNLQ96NB1 174 aa12.39□□□□□ -0.43
SS18-202ENST00000269138 IL17FQ96PD4 163 aa12.39□□□□□ -0.43
SS18-202ENST00000269138 DEPDC7Q96QD5 511 aa12.39□□□□□ -0.43
SS18-202ENST00000269138 ZMYND15Q9H091 742 aa12.39□□□□□ -0.43
SS18-202ENST00000269138 SRMSQ9H3Y6 488 aa12.39□□□□□ -0.43
SS18-202ENST00000269138 TFB2MQ9H5Q4 396 aaKnown RBP12.39□□□□□ -0.43
SS18-202ENST00000269138 HRASLS2Q9NWW9 162 aa12.39□□□□□ -0.43
SS18-202ENST00000269138 KLHL3Q9UH77 587 aa12.39□□□□□ -0.43
SS18-202ENST00000269138 POLG2Q9UHN1 485 aa12.39□□□□□ -0.43
SS18-202ENST00000269138 IKZF3Q9UKT9 509 aa12.39□□□□□ -0.43
SS18-202ENST00000269138 ENTPD2Q9Y5L3 495 aa12.39□□□□□ -0.43
SS18-202ENST00000269138 UNC13CQ8NB66 2214 aa12.39□□□□□ -0.43
SS18-202ENST00000269138 COL27A1Q8IZC6 1860 aaPredicted RBP12.39□□□□□ -0.43
SS18-202ENST00000269138 IGHV5-10-1A0A0J9YXX1 117 aa12.38□□□□□ -0.43
SS18-202ENST00000269138 OR5K3A6NET4 321 aa12.38□□□□□ -0.43
SS18-202ENST00000269138 GFYI3L273 518 aa12.38□□□□□ -0.43
SS18-202ENST00000269138 BTN3A1O00481 513 aa12.38□□□□□ -0.43
SS18-202ENST00000269138 CAPN5O15484 640 aaPredicted RBP12.38□□□□□ -0.43
SS18-202ENST00000269138 KIF1CO43896 1103 aaKnown RBP12.38□□□□□ -0.43
SS18-202ENST00000269138 PSIP1O75475 530 aaKnown RBP12.38□□□□□ -0.43
SS18-202ENST00000269138 WISP3O95389 354 aaPredicted RBP12.38□□□□□ -0.43
SS18-202ENST00000269138 POLR2CP19387 275 aaPredicted RBP12.38□□□□□ -0.43
SS18-202ENST00000269138 GCAP28676 217 aa12.38□□□□□ -0.43
SS18-202ENST00000269138 CAPZBP47756 277 aa12.38□□□□□ -0.43
SS18-202ENST00000269138 RGS4P49798 205 aa12.38□□□□□ -0.43
SS18-202ENST00000269138 SLC12A2P55011 1212 aa12.38□□□□□ -0.43
SS18-202ENST00000269138 INHBCP55103 352 aa12.38□□□□□ -0.43
SS18-202ENST00000269138 IL2P60568 153 aa12.38□□□□□ -0.43
SS18-202ENST00000269138 PHF19Q5T6S3 580 aa12.38□□□□□ -0.43
SS18-202ENST00000269138 MROH9Q5TGP6 573 aa12.38□□□□□ -0.43
SS18-202ENST00000269138 TMEM71Q6P5X7 295 aa12.38□□□□□ -0.43
SS18-202ENST00000269138 WDR74Q6RFH5 385 aaPredicted RBP12.38□□□□□ -0.43
SS18-202ENST00000269138 ERMP1Q7Z2K6 904 aa12.38□□□□□ -0.43
SS18-202ENST00000269138 CMC1Q7Z7K0 106 aa12.38□□□□□ -0.43
SS18-202ENST00000269138 AMIGO1Q86WK6 493 aa12.38□□□□□ -0.43
SS18-202ENST00000269138 DCUN1D3Q8IWE4 304 aa12.38□□□□□ -0.43
SS18-202ENST00000269138 ADGRF3Q8IZF5 1079 aa12.38□□□□□ -0.43
SS18-202ENST00000269138 C2orf73Q8N5S3 287 aaPredicted RBP12.38□□□□□ -0.43
SS18-202ENST00000269138 OR4D9Q8NGE8 314 aa12.38□□□□□ -0.43
SS18-202ENST00000269138 DCAKDQ8WVC6 231 aa12.38□□□□□ -0.43
SS18-202ENST00000269138 UBLCP1Q8WVY7 318 aaPredicted RBP12.38□□□□□ -0.43
SS18-202ENST00000269138 DLG3Q92796 817 aa12.38□□□□□ -0.43
SS18-202ENST00000269138 CCDC74BQ96LY2 380 aa12.38□□□□□ -0.43
SS18-202ENST00000269138 TGM7Q96PF1 710 aa12.38□□□□□ -0.43
SS18-202ENST00000269138 PAFAH2Q99487 392 aa12.38□□□□□ -0.43
SS18-202ENST00000269138 MENTQ9BUN1 341 aa12.38□□□□□ -0.43
SS18-202ENST00000269138 EPB41L1Q9H4G0 881 aa12.38□□□□□ -0.43
SS18-202ENST00000269138 ADAMTS6Q9UKP5 1117 aa12.38□□□□□ -0.43
SS18-202ENST00000269138 NCOR2Q9Y618 2525 aa12.38□□□□□ -0.43
SS18-202ENST00000269138 EXOC1LA0A1B0GW35 172 aa12.37□□□□□ -0.43
SS18-202ENST00000269138 A0A1W2PNU3 283 aaPredicted RBP12.37□□□□□ -0.43
SS18-202ENST00000269138 PMS2P1A4D2B8 440 aa12.37□□□□□ -0.43
SS18-202ENST00000269138 A8MU76 341 aa12.37□□□□□ -0.43
SS18-202ENST00000269138 EIF3FO00303 357 aaPredicted RBP12.37□□□□□ -0.43
SS18-202ENST00000269138 SHBGP04278 402 aa12.37□□□□□ -0.43
SS18-202ENST00000269138 RPN2P04844 631 aa12.37□□□□□ -0.43
SS18-202ENST00000269138 INHBAP08476 426 aa12.37□□□□□ -0.43
SS18-202ENST00000269138 ZNF37AP17032 561 aaPredicted RBP12.37□□□□□ -0.43
SS18-202ENST00000269138 PKLRP30613 574 aa12.37□□□□□ -0.43
SS18-202ENST00000269138 MSH2P43246 934 aa12.37□□□□□ -0.43
SS18-202ENST00000269138 CLPPQ16740 277 aaPredicted RBP12.37□□□□□ -0.43
SS18-202ENST00000269138 IRGCQ6NXR0 463 aa12.37□□□□□ -0.43
SS18-202ENST00000269138 FAM92BQ6ZTR7 304 aa12.37□□□□□ -0.43
SS18-202ENST00000269138 CACTIN-AS1Q8N1I8 211 aa12.37□□□□□ -0.43
SS18-202ENST00000269138 SPATA6LQ8N4H0 392 aa12.37□□□□□ -0.43
SS18-202ENST00000269138 RCBTB1Q8NDN9 531 aa12.37□□□□□ -0.43
SS18-202ENST00000269138 PPM1MQ96MI6 270 aa12.37□□□□□ -0.43
SS18-202ENST00000269138 PKP4Q99569 1192 aa12.37□□□□□ -0.43
SS18-202ENST00000269138 UNKQ9C0B0 810 aaKnown RBP12.37□□□□□ -0.43
SS18-202ENST00000269138 GPAMQ9HCL2 828 aa12.37□□□□□ -0.43
SS18-202ENST00000269138 SPHK1Q9NYA1 384 aa12.37□□□□□ -0.43
SS18-202ENST00000269138 PDP2Q9P2J9 529 aa12.37□□□□□ -0.43
SS18-202ENST00000269138 RAB21Q9UL25 225 aa12.37□□□□□ -0.43
SS18-202ENST00000269138 FAM221BA6H8Z2 402 aa12.37□□□□□ -0.43
SS18-202ENST00000269138 CDC7O00311 574 aa12.37□□□□□ -0.43
SS18-202ENST00000269138 C9P02748 559 aa12.37□□□□□ -0.43
SS18-202ENST00000269138 CATP04040 527 aaKnown RBP12.37□□□□□ -0.43
SS18-202ENST00000269138 THRAP10827 490 aa12.37□□□□□ -0.43
SS18-202ENST00000269138 STMN1P16949 149 aa12.37□□□□□ -0.43
SS18-202ENST00000269138 PTPRBP23467 1997 aa12.37□□□□□ -0.43
SS18-202ENST00000269138 CCKBRP32239 447 aa12.37□□□□□ -0.43
SS18-202ENST00000269138 SHMT2P34897 504 aa12.37□□□□□ -0.43
SS18-202ENST00000269138 HSD17B3P37058 310 aa12.37□□□□□ -0.43
SS18-202ENST00000269138 CCNFP41002 786 aa12.37□□□□□ -0.43
SS18-202ENST00000269138 RAB10P61026 200 aa12.37□□□□□ -0.43
SS18-202ENST00000269138 MN1Q10571 1320 aaPredicted RBP12.37□□□□□ -0.43
SS18-202ENST00000269138 ILF2Q12905 390 aaKnown RBP12.37□□□□□ -0.43
SS18-202ENST00000269138 CAMK2BQ13554 666 aa12.37□□□□□ -0.43
SS18-202ENST00000269138 C16orf72Q14CZ0 275 aa12.37□□□□□ -0.43
SS18-202ENST00000269138 ZKSCAN8Q15776 578 aaPredicted RBP12.37□□□□□ -0.43
SS18-202ENST00000269138 TTC23LQ6PF05 361 aa12.37□□□□□ -0.43
SS18-202ENST00000269138 KLHL35Q6PF15 583 aa12.37□□□□□ -0.43
SS18-202ENST00000269138 FBXO38Q6PIJ6 1188 aa12.37□□□□□ -0.43
SS18-202ENST00000269138 UBE2R2Q712K3 238 aaPredicted RBP12.37□□□□□ -0.43
SS18-202ENST00000269138 OOSP2Q86WS3 158 aa12.37□□□□□ -0.43
SS18-202ENST00000269138 PLXDC1Q8IUK5 500 aa12.37□□□□□ -0.43
SS18-202ENST00000269138 MYO1HQ8N1T3 1032 aa12.37□□□□□ -0.43
SS18-202ENST00000269138 LINC01555Q8NAE3 123 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms