RNA–Protein interactions for RNA: ENST00000266679.8

CPSF6-201, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 1 (best) BASIC

Gene CPSF6, Length 2,229 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-201ENST00000266679 OFCC1Q8IZS5 231 aa12.62□□□□□ -0.39
CPSF6-201ENST00000266679 CLHC1Q8NHS4 586 aa12.62□□□□□ -0.39
CPSF6-201ENST00000266679 SLC13A3Q8WWT9 602 aa12.62□□□□□ -0.39
CPSF6-201ENST00000266679 DPY30Q9C005 99 aa12.62□□□□□ -0.39
CPSF6-201ENST00000266679 CLK4Q9HAZ1 481 aaKnown RBP12.62□□□□□ -0.39
CPSF6-201ENST00000266679 ZDHHC3Q9NYG2 299 aa12.62□□□□□ -0.39
CPSF6-201ENST00000266679 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.62□□□□□ -0.39
CPSF6-201ENST00000266679 ZNHIT2Q9UHR6 403 aa12.62□□□□□ -0.39
CPSF6-201ENST00000266679 IFRD1O00458 451 aaPredicted RBP12.62□□□□□ -0.39
CPSF6-201ENST00000266679 LRG1P02750 347 aa12.62□□□□□ -0.39
CPSF6-201ENST00000266679 CDH1P12830 882 aa12.62□□□□□ -0.39
CPSF6-201ENST00000266679 EPB42P16452 691 aa12.62□□□□□ -0.39
CPSF6-201ENST00000266679 MSH3P20585 1137 aa12.62□□□□□ -0.39
CPSF6-201ENST00000266679 LHCGRP22888 699 aa12.62□□□□□ -0.39
CPSF6-201ENST00000266679 NFKBIAP25963 317 aa12.62□□□□□ -0.39
CPSF6-201ENST00000266679 SNRPD1P62314 119 aaKnown RBP12.62□□□□□ -0.39
CPSF6-201ENST00000266679 B4GALNT1Q00973 533 aa12.62□□□□□ -0.39
CPSF6-201ENST00000266679 FXNQ16595 210 aa12.62□□□□□ -0.39
CPSF6-201ENST00000266679 FAM174BQ3ZCQ3 159 aa12.62□□□□□ -0.39
CPSF6-201ENST00000266679 ATP13A5Q4VNC0 1218 aa12.62□□□□□ -0.39
CPSF6-201ENST00000266679 TPRG1Q6ZUI0 275 aa12.62□□□□□ -0.39
CPSF6-201ENST00000266679 USP45Q70EL2 814 aa12.62□□□□□ -0.39
CPSF6-201ENST00000266679 CBARPQ8N350 705 aaPredicted RBP12.62□□□□□ -0.39
CPSF6-201ENST00000266679 KRTCAP2Q8N6L1 136 aa12.62□□□□□ -0.39
CPSF6-201ENST00000266679 MAGEE2Q8TD90 523 aaPredicted RBP12.62□□□□□ -0.39
CPSF6-201ENST00000266679 CHID1Q9BWS9 393 aa12.62□□□□□ -0.39
CPSF6-201ENST00000266679 SOX17Q9H6I2 414 aaPredicted RBP12.62□□□□□ -0.39
CPSF6-201ENST00000266679 RC3H2Q9HBD1 1191 aaKnown RBP12.62□□□□□ -0.39
CPSF6-201ENST00000266679 LRTM1Q9HBL6 345 aa12.62□□□□□ -0.39
CPSF6-201ENST00000266679 VAPAQ9P0L0 249 aa12.62□□□□□ -0.39
CPSF6-201ENST00000266679 SLC8A2Q9UPR5 921 aa12.62□□□□□ -0.39
CPSF6-201ENST00000266679 ZNF510Q9Y2H8 683 aa12.62□□□□□ -0.39
CPSF6-201ENST00000266679 CEPT1Q9Y6K0 416 aa12.62□□□□□ -0.39
CPSF6-201ENST00000266679 ULK1O75385 1050 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 SEC22BO75396 215 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 WDR47O94967 919 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 ANXA6P08133 673 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 EBLN1P0CF75 366 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 NSG1P42857 185 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 SLC36A3Q495N2 470 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 SPANXN4Q5MJ08 99 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 CACHD1Q5VU97 1274 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 PRR23BQ6ZRT6 265 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 RGL4Q8IZJ4 473 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 ITFG1Q8TB96 612 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 PHOSPHO2Q8TCD6 241 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 HM13Q8TCT9 377 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 SKA2Q8WVK7 121 aaPredicted RBP12.61□□□□□ -0.39
CPSF6-201ENST00000266679 VOPP1Q96AW1 172 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 COPS8Q99627 209 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 SUV39H2Q9H5I1 410 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 ARL15Q9NXU5 204 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 CD84Q9UIB8 345 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 MYO7AQ13402 2215 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 ATG2AQ2TAZ0 1938 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 GSTA4O15217 222 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 CLOCKO15516 846 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 STK16O75716 305 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 UGT2B4P06133 528 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 ANXA5P08758 320 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 C1SP09871 688 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 HLA-FP30511 346 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 CCR7P32248 378 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 RPS9P46781 194 aaKnown RBP12.61□□□□□ -0.39
CPSF6-201ENST00000266679 GNPDA1P46926 289 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 ALDH3B2P48448 385 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 SH3BGRP55822 239 aaPredicted RBP12.61□□□□□ -0.39
CPSF6-201ENST00000266679 MAD2L1Q13257 205 aaPredicted RBP12.61□□□□□ -0.39
CPSF6-201ENST00000266679 RBBP5Q15291 538 aaKnown RBP12.61□□□□□ -0.39
CPSF6-201ENST00000266679 MPP7Q5T2T1 576 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 TMEM214Q6NUQ4 689 aaKnown RBP12.61□□□□□ -0.39
CPSF6-201ENST00000266679 TBPL2Q6SJ96 375 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 SUSD1Q6UWL2 747 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 EP400NLQ6ZTU2 488 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 METTL3Q86U44 580 aaKnown RBP12.61□□□□□ -0.39
CPSF6-201ENST00000266679 CHCHD4Q8N4Q1 142 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 BPIFB1Q8TDL5 484 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 FIG4Q92562 907 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 C19orf43Q9BQ61 176 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 CORO1BQ9BR76 489 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 NTMT1Q9BV86 223 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 RDH14Q9HBH5 336 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 SMPD3Q9NY59 655 aaPredicted RBP12.61□□□□□ -0.39
CPSF6-201ENST00000266679 FADS3Q9Y5Q0 445 aa12.61□□□□□ -0.39
CPSF6-201ENST00000266679 DOCK6Q96HP0 2047 aa12.6□□□□□ -0.39
CPSF6-201ENST00000266679 SNAP29O95721 258 aa12.6□□□□□ -0.39
CPSF6-201ENST00000266679 PCNAP12004 261 aa12.6□□□□□ -0.39
CPSF6-201ENST00000266679 GGT1P19440 569 aa12.6□□□□□ -0.39
CPSF6-201ENST00000266679 AKT1P31749 480 aa12.6□□□□□ -0.39
CPSF6-201ENST00000266679 GGT5P36269 586 aa12.6□□□□□ -0.39
CPSF6-201ENST00000266679 CAPGP40121 348 aa12.6□□□□□ -0.39
CPSF6-201ENST00000266679 PTSQ03393 145 aa12.6□□□□□ -0.39
CPSF6-201ENST00000266679 CYP4F3Q08477 520 aa12.6□□□□□ -0.39
CPSF6-201ENST00000266679 CPSF6Q16630 551 aaKnown RBP eCLIP12.6□□□□□ -0.391e-6■■■■□ 26.7
CPSF6-201ENST00000266679 KCTD21Q4G0X4 260 aa12.6□□□□□ -0.39
CPSF6-201ENST00000266679 ASTLQ6HA08 431 aaPredicted RBP12.6□□□□□ -0.39
CPSF6-201ENST00000266679 BORAQ6PGQ7 559 aa12.6□□□□□ -0.39
CPSF6-201ENST00000266679 UBE2R2Q712K3 238 aaPredicted RBP12.6□□□□□ -0.39
CPSF6-201ENST00000266679 RIMKLAQ8IXN7 391 aa12.6□□□□□ -0.39
CPSF6-201ENST00000266679 DHRSXQ8N5I4 330 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms