RNA–Protein interactions for RNA: ENST00000266546.10

CLSTN3-201, Transcript of calsyntenin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,185 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-201ENST00000266546 PCDHGA7Q9Y5G6 932 aa11.33□□□□□ -0.6
CLSTN3-201ENST00000266546 LRRC37A2A6NM11 1700 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 A0A1B0GVM2 712 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 AZGP1P25311 298 aaKnown RBP11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 DSC2Q02487 901 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 FCHO2Q0JRZ9 810 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 PLEKHG6Q3KR16 790 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 ATAD3BQ5T9A4 648 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 DMRTB1Q96MA1 342 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 ZNF599Q96NL3 588 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 COPS4Q9BT78 406 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 KIFC1Q9BW19 673 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 TRIM8Q9BZR9 551 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 SLC7A5P2Q9GIP4 190 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 ABCG8Q9H221 673 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 EHD1Q9H4M9 534 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 EXD2Q9NVH0 621 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 SLC25A13Q9UJS0 675 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 AURKAO14965 403 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 CYP7B1O75881 506 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 PKMP14618 531 aaKnown RBP11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 CORO1AP31146 461 aaKnown RBP11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 RTP2Q5QGT7 225 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 CHERPQ8IWX8 916 aaKnown RBP11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 GPR65Q8IYL9 337 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 SLC13A3Q8WWT9 602 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 NT5C3BQ969T7 300 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 AURKBQ96GD4 344 aaPredicted RBP11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 CGREF1Q99674 301 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 BPIFA1Q9NP55 256 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 DCLK1O15075 740 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 SH3BGRLO75368 114 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 SERPINA1P01009 418 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 ANXA5P08758 320 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 GSTM1P09488 218 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 SPATA31D3P0C874 917 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 CCT3P49368 545 aaKnown RBP11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 INHBCP55103 352 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 RAB33AQ14088 237 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 FAM174BQ3ZCQ3 159 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 PYDC2Q56P42 97 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 C1orf53Q5VUE5 145 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 SPATA31D4Q6ZUB0 917 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 DNAJB7Q7Z6W7 309 aaPredicted RBP11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 LILRA2Q8N149 483 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 KDM1BQ8NB78 822 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 TFAP2CQ92754 450 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 HDAC2Q92769 488 aaKnown RBP11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 SNX6Q9UNH7 406 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 PMF1-BGLAPU3KQ54 211 aa11.32□□□□□ -0.6
CLSTN3-201ENST00000266546 LOC100130705A0A1B0GUX0 176 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 PLK4O00444 970 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 SMIM18P0DKX4 95 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 LPOP22079 712 aaPredicted RBP11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 MAGEA6P43360 314 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 ATP4BP51164 291 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 OR2B6P58173 313 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 VBP1P61758 197 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 MBTPS1Q14703 1052 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 SLC8B1Q6J4K2 584 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.31□□□□□ -0.63e-8■■■□□ 15.7
CLSTN3-201ENST00000266546 SLC39A11Q8N1S5 342 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 KREMEN2Q8NCW0 462 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 OR4K2Q8NGD2 314 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 RNFT2Q96EX2 444 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 RAD9AQ99638 391 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 HEPHQ9BQS7 1158 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 CORO1BQ9BR76 489 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 SLC39A8Q9C0K1 460 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 SMURF2Q9HAU4 748 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 EIF2B4Q9UI10 523 aaKnown RBP11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 HS3ST4Q9Y661 456 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 C7orf72A4D263 438 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 SUV39H1O43463 412 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 PRKD3O94806 890 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 CRATP43155 626 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 CTSKP43235 329 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 ATP6AP1Q15904 470 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 C6orf141Q5SZD1 244 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 KIAA0319Q5VV43 1072 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 EIF3MQ7L2H7 374 aaKnown RBP11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 GRPEL2Q8TAA5 225 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 NELL1Q92832 810 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 KHSRPQ92945 711 aaKnown RBP eCLIP11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 LRTM1Q9HBL6 345 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 AMBNQ9NP70 447 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 SPATA2Q9UM82 520 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 GSTK1Q9Y2Q3 226 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 OR51F1A6NGY5 319 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 FGF18O76093 207 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 TBX18O95935 607 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 GOT2P00505 430 aaKnown RBP11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 DDX6P26196 483 aaKnown RBP eCLIP11.31□□□□□ -0.68e-14■■■■■ 31.7
CLSTN3-201ENST00000266546 HIST2H2ACQ16777 129 aaPredicted RBP11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 MPPE1Q53F39 396 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 HIST2H2AA3Q6FI13 130 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 FAM131AQ6UXB0 335 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 FCGR1BQ92637 280 aa11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 NPLQ9BXD5 320 aaPredicted RBP11.31□□□□□ -0.6
CLSTN3-201ENST00000266546 IPPKQ9H8X2 491 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms