RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 CYP2S1Q96SQ9 504 aa12.77□□□□□ -0.36
MSH2-201ENST00000233146 FAM129BQ96TA1 746 aa12.77□□□□□ -0.36
MSH2-201ENST00000233146 NPAS1Q99742 590 aa12.77□□□□□ -0.36
MSH2-201ENST00000233146 ABCB8Q9NUT2 735 aa12.77□□□□□ -0.36
MSH2-201ENST00000233146 MCUBQ9NWR8 336 aa12.77□□□□□ -0.36
MSH2-201ENST00000233146 LIPT1Q9Y234 373 aa12.77□□□□□ -0.36
MSH2-201ENST00000233146 ORC6Q9Y5N6 252 aa12.77□□□□□ -0.36
MSH2-201ENST00000233146 A0A0A0MRY4 1105 aa12.77□□□□□ -0.37
MSH2-201ENST00000233146 MYL12BO14950 172 aa12.77□□□□□ -0.37
MSH2-201ENST00000233146 HRO43593 1189 aa12.77□□□□□ -0.37
MSH2-201ENST00000233146 SNAPINO95295 136 aa12.77□□□□□ -0.37
MSH2-201ENST00000233146 ARP10275 920 aa12.77□□□□□ -0.37
MSH2-201ENST00000233146 SLC2A4P14672 509 aa12.77□□□□□ -0.37
MSH2-201ENST00000233146 TAL1P17542 331 aaPredicted RBP12.77□□□□□ -0.37
MSH2-201ENST00000233146 MYL12AP19105 171 aa12.77□□□□□ -0.37
MSH2-201ENST00000233146 RECQLP46063 649 aaPredicted RBP12.77□□□□□ -0.37
MSH2-201ENST00000233146 DUSP6Q16828 381 aa12.77□□□□□ -0.37
MSH2-201ENST00000233146 TOR1AIP1Q5JTV8 583 aa12.77□□□□□ -0.37
MSH2-201ENST00000233146 CLEC6AQ6EIG7 209 aa12.77□□□□□ -0.37
MSH2-201ENST00000233146 SMYD5Q6GMV2 418 aa12.77□□□□□ -0.37
MSH2-201ENST00000233146 RPS27LQ71UM5 84 aaKnown RBP12.77□□□□□ -0.37
MSH2-201ENST00000233146 PCNPQ8WW12 178 aaKnown RBP12.77□□□□□ -0.37
MSH2-201ENST00000233146 SPATA13Q96N96 652 aa12.77□□□□□ -0.37
MSH2-201ENST00000233146 SERPINB11Q96P15 392 aa12.77□□□□□ -0.37
MSH2-201ENST00000233146 RACGAP1Q9H0H5 632 aa12.77□□□□□ -0.37
MSH2-201ENST00000233146 LHX5Q9H2C1 402 aa12.77□□□□□ -0.37
MSH2-201ENST00000233146 TRIM45Q9H8W5 580 aaPredicted RBP12.77□□□□□ -0.37
MSH2-201ENST00000233146 SDR39U1Q9NRG7 319 aaPredicted RBP12.77□□□□□ -0.37
MSH2-201ENST00000233146 GPATCH2LQ9NWQ4 482 aa12.77□□□□□ -0.37
MSH2-201ENST00000233146 SIRT5Q9NXA8 310 aa12.77□□□□□ -0.37
MSH2-201ENST00000233146 KIF17Q9P2E2 1029 aa12.77□□□□□ -0.37
MSH2-201ENST00000233146 ERVW-1Q9UQF0 538 aa12.77□□□□□ -0.37
MSH2-201ENST00000233146 ZNF541Q9H0D2 1346 aa12.77□□□□□ -0.37
MSH2-201ENST00000233146 ANKRD12Q6UB98 2062 aa12.77□□□□□ -0.37
MSH2-201ENST00000233146 SLC35F4A4IF30 521 aa12.77□□□□□ -0.37
MSH2-201ENST00000233146 MROH6A6NGR9 719 aa12.77□□□□□ -0.37
MSH2-201ENST00000233146 ANXA6P08133 673 aa12.77□□□□□ -0.37
MSH2-201ENST00000233146 RAB25P57735 213 aa12.77□□□□□ -0.37
MSH2-201ENST00000233146 EMX2Q04743 252 aa12.77□□□□□ -0.37
MSH2-201ENST00000233146 NKG7Q16617 165 aa12.77□□□□□ -0.37
MSH2-201ENST00000233146 COL28A1Q2UY09 1125 aa12.77□□□□□ -0.37
MSH2-201ENST00000233146 PAGE3Q5JUK9 113 aa12.77□□□□□ -0.37
MSH2-201ENST00000233146 GPRIN3Q6ZVF9 776 aa12.77□□□□□ -0.37
MSH2-201ENST00000233146 AHSA2Q719I0 299 aa12.77□□□□□ -0.37
MSH2-201ENST00000233146 RBFAQ8N0V3 343 aa12.77□□□□□ -0.37
MSH2-201ENST00000233146 FAM86B1Q8N7N1 296 aa12.77□□□□□ -0.37
MSH2-201ENST00000233146 FAM181AQ8N9Y4 354 aa12.77□□□□□ -0.37
MSH2-201ENST00000233146 GPR151Q8TDV0 419 aa12.77□□□□□ -0.37
MSH2-201ENST00000233146 UTP15Q8TED0 518 aaKnown RBP12.77□□□□□ -0.37
MSH2-201ENST00000233146 TSPEARQ8WU66 669 aa12.77□□□□□ -0.37
MSH2-201ENST00000233146 EVLQ9UI08 416 aaPredicted RBP12.77□□□□□ -0.37
MSH2-201ENST00000233146 C2orf81A6NN90 581 aa12.76□□□□□ -0.37
MSH2-201ENST00000233146 MITFO75030 526 aaPredicted RBP12.76□□□□□ -0.37
MSH2-201ENST00000233146 CDK1P06493 297 aa12.76□□□□□ -0.37
MSH2-201ENST00000233146 EPHA5P54756 1037 aa12.76□□□□□ -0.37
MSH2-201ENST00000233146 CDH8P55286 799 aa12.76□□□□□ -0.37
MSH2-201ENST00000233146 SP2Q02086 613 aa12.76□□□□□ -0.37
MSH2-201ENST00000233146 PCDH1Q08174 1060 aa12.76□□□□□ -0.37
MSH2-201ENST00000233146 PPP1R8Q12972 351 aaKnown RBP12.76□□□□□ -0.37
MSH2-201ENST00000233146 MRPL28Q13084 256 aaKnown RBP12.76□□□□□ -0.37
MSH2-201ENST00000233146 MAD2L1BPQ15013 274 aaPredicted RBP12.76□□□□□ -0.37
MSH2-201ENST00000233146 TBCEQ15813 527 aaPredicted RBP12.76□□□□□ -0.37
MSH2-201ENST00000233146 FAM102BQ5T8I3 360 aa12.76□□□□□ -0.37
MSH2-201ENST00000233146 METTL11BQ5VVY1 283 aa12.76□□□□□ -0.37
MSH2-201ENST00000233146 ANKRD54Q6NXT1 300 aa12.76□□□□□ -0.37
MSH2-201ENST00000233146 TMPRSS11AQ6ZMR5 421 aa12.76□□□□□ -0.37
MSH2-201ENST00000233146 RNF180Q86T96 592 aa12.76□□□□□ -0.37
MSH2-201ENST00000233146 RNF34Q969K3 372 aa12.76□□□□□ -0.37
MSH2-201ENST00000233146 CHCHD6Q9BRQ6 235 aa12.76□□□□□ -0.37
MSH2-201ENST00000233146 ZCCHC4Q9H5U6 513 aa12.76□□□□□ -0.37
MSH2-201ENST00000233146 RANBP3Q9H6Z4 567 aaPredicted RBP12.76□□□□□ -0.37
MSH2-201ENST00000233146 RDH8Q9NYR8 311 aa12.76□□□□□ -0.37
MSH2-201ENST00000233146 A0A0A6YYJ9 748 aa12.76□□□□□ -0.37
MSH2-201ENST00000233146 GNGT2O14610 69 aa12.76□□□□□ -0.37
MSH2-201ENST00000233146 PLA2G10O15496 165 aa12.76□□□□□ -0.37
MSH2-201ENST00000233146 KIAA0513O60268 411 aa12.76□□□□□ -0.37
MSH2-201ENST00000233146 PGK1P00558 417 aa12.76□□□□□ -0.37
MSH2-201ENST00000233146 NUP62P37198 522 aaPredicted RBP12.76□□□□□ -0.37
MSH2-201ENST00000233146 AKR1D1P51857 326 aa12.76□□□□□ -0.37
MSH2-201ENST00000233146 ORC1Q13415 861 aa12.76□□□□□ -0.37
MSH2-201ENST00000233146 GRAPQ13588 217 aa12.76□□□□□ -0.37
MSH2-201ENST00000233146 EXOSC2Q13868 293 aaKnown RBP12.76□□□□□ -0.37
MSH2-201ENST00000233146 SIM2Q14190 667 aaPredicted RBP12.76□□□□□ -0.37
MSH2-201ENST00000233146 LARS2Q15031 903 aaKnown RBP12.76□□□□□ -0.37
MSH2-201ENST00000233146 FAM83EQ2M2I3 478 aa12.76□□□□□ -0.37
MSH2-201ENST00000233146 SAXO2Q658L1 398 aa12.76□□□□□ -0.37
MSH2-201ENST00000233146 FAM9CQ8IZT9 166 aa12.76□□□□□ -0.37
MSH2-201ENST00000233146 SPATA6LQ8N4H0 392 aa12.76□□□□□ -0.37
MSH2-201ENST00000233146 ATAD1Q8NBU5 361 aa12.76□□□□□ -0.37
MSH2-201ENST00000233146 AKT1S1Q96B36 256 aa12.76□□□□□ -0.37
MSH2-201ENST00000233146 SGK3Q96BR1 496 aa12.76□□□□□ -0.37
MSH2-201ENST00000233146 SLC9A7Q96T83 725 aa12.76□□□□□ -0.37
MSH2-201ENST00000233146 CNPY3Q9BT09 278 aa12.76□□□□□ -0.37
MSH2-201ENST00000233146 LRRC3Q9BY71 257 aa12.76□□□□□ -0.37
MSH2-201ENST00000233146 MS4A7Q9GZW8 240 aaPredicted RBP12.76□□□□□ -0.37
MSH2-201ENST00000233146 ASB7Q9H672 318 aa12.76□□□□□ -0.37
MSH2-201ENST00000233146 GPBP1L1Q9HC44 474 aaPredicted RBP12.76□□□□□ -0.37
MSH2-201ENST00000233146 PKP3Q9Y446 797 aa12.76□□□□□ -0.37
MSH2-201ENST00000233146 EP400Q96L91 3159 aa12.76□□□□□ -0.37
MSH2-201ENST00000233146 UBFD1O14562 309 aaKnown RBP12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms