RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 SCAMP5Q8TAC9 235 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 ABCB8Q9NUT2 735 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 CCDC59Q9P031 241 aaKnown RBP13.32□□□□□ -0.28
SF3A1-201ENST00000215793 TMA7Q9Y2S6 64 aaKnown RBP13.32□□□□□ -0.28
SF3A1-201ENST00000215793 RPL36Q9Y3U8 105 aaKnown RBP13.32□□□□□ -0.28
SF3A1-201ENST00000215793 A0A1W2PRB8 838 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 PCDH7O60245 1069 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 FCHO2Q0JRZ9 810 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 KCTD8Q6ZWB6 473 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 HID1Q8IV36 788 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 ZCCHC10Q8TBK6 192 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 CLEC4CQ8WTT0 213 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 C10orf82Q8WW14 230 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 C12orf66Q96MD2 445 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 RIPOR3Q96MK2 946 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 MTERF1Q99551 399 aaKnown RBP13.32□□□□□ -0.28
SF3A1-201ENST00000215793 POLR2J3Q9H1A7 115 aaKnown RBP13.32□□□□□ -0.28
SF3A1-201ENST00000215793 MROH2AA6NES4 1674 aa13.32□□□□□ -0.28
SF3A1-201ENST00000215793 DPPA5A6NC42 116 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 FAM172BPA6NC97 362 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 WRBO00258 174 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 SLC31A1O15431 190 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 POU2F1P14859 743 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 FOXN2P32314 431 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 SH3PXD2AQ5TCZ1 1133 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 ADNP2Q6IQ32 1131 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 FAM129CQ86XR2 697 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 CHST4Q8NCG5 386 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 CD99L2Q8TCZ2 262 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 SUV39H2Q9H5I1 410 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 SP140LQ9H930 580 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 WNT9AO14904 365 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 RPL17P18621 184 aaKnown RBP13.31□□□□□ -0.28
SF3A1-201ENST00000215793 AQP4P55087 323 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 WDR4P57081 412 aaKnown RBP13.31□□□□□ -0.28
SF3A1-201ENST00000215793 SLC10A7Q0GE19 358 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 PGBD2Q6P3X8 592 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 PAQR3Q6TCH7 311 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 PRSS55Q6UWB4 352 aaPredicted RBP13.31□□□□□ -0.28
SF3A1-201ENST00000215793 CCDC80Q76M96 950 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 NUDT13Q86X67 352 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 KCTD13Q8WZ19 329 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 UFD1Q92890 307 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 SLC38A3Q99624 504 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 ZDHHC3Q9NYG2 299 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 PFDN2Q9UHV9 154 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 GRIP1Q9Y3R0 1128 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 PCDHGB7Q9Y5F8 929 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 ARL5AQ9Y689 179 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 DDX6P26196 483 aaKnown RBP eCLIP13.31□□□□□ -0.28
SF3A1-201ENST00000215793 MPIP34949 423 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 CLCN4P51793 760 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 SYPL2Q5VXT5 272 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 LRP10Q7Z4F1 713 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 TMCO6Q96DC7 493 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 CDKN2AIPNLQ96HQ2 116 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 GAL3ST4Q96RP7 486 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 BHLHE41Q9C0J9 482 aaPredicted RBP13.31□□□□□ -0.28
SF3A1-201ENST00000215793 USP29Q9HBJ7 922 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 ZCCHC3Q9NUD5 404 aaKnown RBP13.31□□□□□ -0.28
SF3A1-201ENST00000215793 TUBA8Q9NY65 449 aaPredicted RBP13.31□□□□□ -0.28
SF3A1-201ENST00000215793 STOML2Q9UJZ1 356 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 ZNF541Q9H0D2 1346 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 ZNF280AP59817 542 aaPredicted RBP13.31□□□□□ -0.28
SF3A1-201ENST00000215793 SP2Q02086 613 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 OXR1Q8N573 874 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 ING5Q8WYH8 240 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 OR2AG1Q9H205 316 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 C11orf16Q9NQ32 467 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 MOCS1Q9NZB8 636 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 VPS29Q9UBQ0 182 aa13.31□□□□□ -0.28
SF3A1-201ENST00000215793 ZNF823P16415 610 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 NDUFS1P28331 727 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 IL12BP29460 328 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 NUP54Q7Z3B4 507 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 OR13C4Q8NGS5 318 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 C9orf43Q8TAL5 461 aaPredicted RBP13.3□□□□□ -0.28
SF3A1-201ENST00000215793 TOP1MTQ969P6 601 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 ASB9Q96DX5 294 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 EBF4Q9BQW3 602 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 ANKRA2Q9H9E1 313 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 POLMQ9NP87 494 aaPredicted RBP13.3□□□□□ -0.28
SF3A1-201ENST00000215793 MRPS30Q9NP92 439 aaKnown RBP13.3□□□□□ -0.28
SF3A1-201ENST00000215793 TVP23BQ9NYZ1 205 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 UPB1Q9UBR1 384 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 NOS1APO75052 506 aaPredicted RBP13.3□□□□□ -0.28
SF3A1-201ENST00000215793 ALPPP05187 535 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 ZNF12P17014 697 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 AVPR1BP47901 424 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 RPS24P62847 133 aaKnown RBP13.3□□□□□ -0.28
SF3A1-201ENST00000215793 TARDBPQ13148 414 aaKnown RBP eCLIP13.3□□□□□ -0.28
SF3A1-201ENST00000215793 RNASE12Q5GAN4 147 aaKnown RBP13.3□□□□□ -0.28
SF3A1-201ENST00000215793 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.3□□□□□ -0.28
SF3A1-201ENST00000215793 UTS2BQ765I0 119 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 CEP295NLQ96MC4 621 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 FBXL18Q96ME1 805 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 TRNAU1APQ9NX07 287 aaKnown RBP13.3□□□□□ -0.28
SF3A1-201ENST00000215793 SPATA7Q9P0W8 599 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 WASF2Q9Y6W5 498 aa13.3□□□□□ -0.28
SF3A1-201ENST00000215793 DCLK1O15075 740 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms