RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 CXCL12P48061 93 aa19.62■□□□□ 0.73
CLN3-250ENST00000636839 CCR5P51681 352 aa19.62■□□□□ 0.73
CLN3-250ENST00000636839 NFATC4Q14934 902 aa19.62■□□□□ 0.73
CLN3-250ENST00000636839 PCBP2Q15366 365 aaKnown RBP eCLIP19.62■□□□□ 0.73
CLN3-250ENST00000636839 PDCD2Q16342 344 aaPredicted RBP19.62■□□□□ 0.73
CLN3-250ENST00000636839 METRNLQ641Q3 311 aa19.62■□□□□ 0.73
CLN3-250ENST00000636839 SULT1C3Q6IMI6 304 aa19.62■□□□□ 0.73
CLN3-250ENST00000636839 FITM2Q8N6M3 262 aa19.62■□□□□ 0.73
CLN3-250ENST00000636839 OR56A4Q8NGH8 313 aa19.62■□□□□ 0.73
CLN3-250ENST00000636839 ZDHHC5Q9C0B5 715 aa19.62■□□□□ 0.73
CLN3-250ENST00000636839 OSGEPL1Q9H4B0 414 aa19.62■□□□□ 0.73
CLN3-250ENST00000636839 WDR55Q9H6Y2 383 aaPredicted RBP19.62■□□□□ 0.73
CLN3-250ENST00000636839 NOL11Q9H8H0 719 aaKnown RBP19.62■□□□□ 0.73
CLN3-250ENST00000636839 CARS2Q9HA77 564 aaKnown RBP19.62■□□□□ 0.73
CLN3-250ENST00000636839 KCNK4Q9NYG8 393 aa19.62■□□□□ 0.73
CLN3-250ENST00000636839 DLGAP2Q9P1A6 1054 aa19.62■□□□□ 0.73
CLN3-250ENST00000636839 HEY2Q9UBP5 337 aa19.62■□□□□ 0.73
CLN3-250ENST00000636839 PRSS38A1L453 326 aa19.61■□□□□ 0.73
CLN3-250ENST00000636839 HIST1H2AGP0C0S8 130 aaPredicted RBP19.61■□□□□ 0.73
CLN3-250ENST00000636839 HIST1H2ADP20671 130 aa19.61■□□□□ 0.73
CLN3-250ENST00000636839 MAOBP27338 520 aa19.61■□□□□ 0.73
CLN3-250ENST00000636839 SERPINB5P36952 375 aa19.61■□□□□ 0.73
CLN3-250ENST00000636839 LAYNQ6UX15 382 aa19.61■□□□□ 0.73
CLN3-250ENST00000636839 GOLGA7Q7Z5G4 137 aa19.61■□□□□ 0.73
CLN3-250ENST00000636839 SYVN1Q86TM6 617 aa19.61■□□□□ 0.73
CLN3-250ENST00000636839 GALNT13Q8IUC8 556 aa19.61■□□□□ 0.73
CLN3-250ENST00000636839 SLC22A18ASQ8N1D0 253 aa19.61■□□□□ 0.73
CLN3-250ENST00000636839 TEX9Q8N6V9 391 aa19.61■□□□□ 0.73
CLN3-250ENST00000636839 MCOLN3Q8TDD5 553 aa19.61■□□□□ 0.73
CLN3-250ENST00000636839 HIST1H2AHQ96KK5 128 aa19.61■□□□□ 0.73
CLN3-250ENST00000636839 PKP4Q99569 1192 aa19.61■□□□□ 0.73
CLN3-250ENST00000636839 HIST1H2AJQ99878 128 aa19.61■□□□□ 0.73
CLN3-250ENST00000636839 H2AFJQ9BTM1 129 aa19.61■□□□□ 0.73
CLN3-250ENST00000636839 CD244Q9BZW8 370 aa19.61■□□□□ 0.73
CLN3-250ENST00000636839 TRAF6Q9Y4K3 522 aa19.61■□□□□ 0.73
CLN3-250ENST00000636839 ZFC3H1O60293 1989 aaKnown RBP19.61■□□□□ 0.73
CLN3-250ENST00000636839 GOLGA8QA0A0J9YX86 632 aa19.61■□□□□ 0.73
CLN3-250ENST00000636839 GOLGA8OA6NCC3 632 aa19.61■□□□□ 0.73
CLN3-250ENST00000636839 GOLGA8NF8WBI6 632 aa19.61■□□□□ 0.73
CLN3-250ENST00000636839 SLC16A5O15375 505 aa19.61■□□□□ 0.73
CLN3-250ENST00000636839 DIAPH2O60879 1101 aa19.61■□□□□ 0.73
CLN3-250ENST00000636839 C1orf105O95561 183 aa19.61■□□□□ 0.73
CLN3-250ENST00000636839 ANXA5P08758 320 aa19.61■□□□□ 0.73
CLN3-250ENST00000636839 CYP2A7P20853 494 aa19.61■□□□□ 0.73
CLN3-250ENST00000636839 KIAA1024LP59773 190 aa19.61■□□□□ 0.73
CLN3-250ENST00000636839 LCP2Q13094 533 aa19.61■□□□□ 0.73
CLN3-250ENST00000636839 SP140Q13342 867 aa19.61■□□□□ 0.73
CLN3-250ENST00000636839 RBBP7Q16576 425 aa19.61■□□□□ 0.73
CLN3-250ENST00000636839 MTDHQ86UE4 582 aaKnown RBP19.61■□□□□ 0.73
CLN3-250ENST00000636839 CCL4L1Q8NHW4 92 aa19.61■□□□□ 0.73
CLN3-250ENST00000636839 AGAP11Q8TF27 550 aa19.61■□□□□ 0.73
CLN3-250ENST00000636839 EML4Q9HC35 981 aaKnown RBP19.61■□□□□ 0.73
CLN3-250ENST00000636839 PTGDR2Q9Y5Y4 395 aa19.61■□□□□ 0.73
CLN3-250ENST00000636839 CACNA1IQ9P0X4 2223 aa19.61■□□□□ 0.73
CLN3-250ENST00000636839 ABCA7Q8IZY2 2146 aa19.6■□□□□ 0.73
CLN3-250ENST00000636839 GPR89AB7ZAQ6 455 aa19.6■□□□□ 0.73
CLN3-250ENST00000636839 PRAMEF26H0Y7S4 382 aa19.6■□□□□ 0.73
CLN3-250ENST00000636839 OR7A17O14581 309 aa19.6■□□□□ 0.73
CLN3-250ENST00000636839 SKAP2O75563 359 aaPredicted RBP19.6■□□□□ 0.73
CLN3-250ENST00000636839 ENO2P09104 434 aaPredicted RBP19.6■□□□□ 0.73
CLN3-250ENST00000636839 GPR89BP0CG08 455 aa19.6■□□□□ 0.73
CLN3-250ENST00000636839 ALOX15P16050 662 aaPredicted RBP19.6■□□□□ 0.73
CLN3-250ENST00000636839 CLCNKAP51800 687 aa19.6■□□□□ 0.73
CLN3-250ENST00000636839 TUBB3Q13509 450 aa19.6■□□□□ 0.73
CLN3-250ENST00000636839 GTF2H2Q13888 395 aa19.6■□□□□ 0.73
CLN3-250ENST00000636839 SPRED3Q2MJR0 410 aa19.6■□□□□ 0.73
CLN3-250ENST00000636839 GTF2H2CQ6P1K8 395 aa19.6■□□□□ 0.73
CLN3-250ENST00000636839 EPGNQ6UW88 154 aa19.6■□□□□ 0.73
CLN3-250ENST00000636839 PPFIBP2Q8ND30 876 aa19.6■□□□□ 0.73
CLN3-250ENST00000636839 SCARF2Q96GP6 870 aaPredicted RBP19.6■□□□□ 0.73
CLN3-250ENST00000636839 UHRF1Q96T88 793 aaPredicted RBP19.6■□□□□ 0.73
CLN3-250ENST00000636839 TRMOQ9BU70 441 aa19.6■□□□□ 0.73
CLN3-250ENST00000636839 TRIM54Q9BYV2 358 aa19.6■□□□□ 0.73
CLN3-250ENST00000636839 WWP1Q9H0M0 922 aa19.6■□□□□ 0.73
CLN3-250ENST00000636839 DPEP2Q9H4A9 486 aa19.6■□□□□ 0.73
CLN3-250ENST00000636839 TMCO1Q9UM00 188 aa19.6■□□□□ 0.73
CLN3-250ENST00000636839 TIMM22Q9Y584 194 aa19.6■□□□□ 0.73
CLN3-250ENST00000636839 KNL1Q8NG31 2342 aa19.59■□□□□ 0.73
CLN3-250ENST00000636839 CCT8L1PA6NM43 557 aa19.59■□□□□ 0.73
CLN3-250ENST00000636839 HOXC4P09017 264 aaPredicted RBP19.59■□□□□ 0.73
CLN3-250ENST00000636839 BCKDHBP21953 392 aa19.59■□□□□ 0.73
CLN3-250ENST00000636839 ITPKAP23677 461 aa19.59■□□□□ 0.73
CLN3-250ENST00000636839 MAP4P27816 1152 aaKnown RBP19.59■□□□□ 0.73
CLN3-250ENST00000636839 GALNT1Q10472 559 aaPredicted RBP19.59■□□□□ 0.73
CLN3-250ENST00000636839 UGT3A2Q3SY77 523 aa19.59■□□□□ 0.73
CLN3-250ENST00000636839 ZNF542PQ5EBM4 170 aa19.59■□□□□ 0.73
CLN3-250ENST00000636839 DUS1LQ6P1R4 473 aaKnown RBP19.59■□□□□ 0.73
CLN3-250ENST00000636839 TRPM8Q7Z2W7 1104 aa19.59■□□□□ 0.73
CLN3-250ENST00000636839 OR5AR1Q8NGP9 310 aa19.59■□□□□ 0.73
CLN3-250ENST00000636839 WDR92Q96MX6 357 aa19.59■□□□□ 0.73
CLN3-250ENST00000636839 SLC6A18Q96N87 628 aa19.59■□□□□ 0.73
CLN3-250ENST00000636839 OR52B2Q96RD2 323 aa19.59■□□□□ 0.73
CLN3-250ENST00000636839 EPB41L3Q9Y2J2 1087 aaPredicted RBP19.59■□□□□ 0.73
CLN3-250ENST00000636839 HS3ST3A1Q9Y663 406 aa19.59■□□□□ 0.73
CLN3-250ENST00000636839 DNMT3AQ9Y6K1 912 aaPredicted RBP19.59■□□□□ 0.73
CLN3-250ENST00000636839 A0A1W2PPC4 97 aa19.59■□□□□ 0.73
CLN3-250ENST00000636839 HDAC3O15379 428 aa19.59■□□□□ 0.73
CLN3-250ENST00000636839 NDUFS2O75306 463 aa19.59■□□□□ 0.73
CLN3-250ENST00000636839 KATNA1O75449 491 aa19.59■□□□□ 0.73
CLN3-250ENST00000636839 SLC16A8O95907 504 aa19.59■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms