RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 SMU1Q2TAY7 513 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 FAM214AQ32MH5 1076 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 TTLL9Q3SXZ7 439 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 KIAA1841Q6NSI8 718 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 EIF3MQ7L2H7 374 aaKnown RBP10.84□□□□□ -0.67
CLN3-244ENST00000636147 GPR65Q8IYL9 337 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 GTPBP3Q969Y2 492 aaKnown RBP10.84□□□□□ -0.67
CLN3-244ENST00000636147 ZNF486Q96H40 463 aaPredicted RBP10.84□□□□□ -0.67
CLN3-244ENST00000636147 Q96MT0 163 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 EBPLQ9BY08 206 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 PDGFDQ9GZP0 370 aaPredicted RBP10.84□□□□□ -0.67
CLN3-244ENST00000636147 SP140LQ9H930 580 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 STMN3Q9NZ72 180 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 ARIH1Q9Y4X5 557 aaPredicted RBP10.84□□□□□ -0.67
CLN3-244ENST00000636147 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.84□□□□□ -0.67
CLN3-244ENST00000636147 MAFKO60675 156 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 CAPN15O75808 1086 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 MZF1P28698 734 aaPredicted RBP10.84□□□□□ -0.67
CLN3-244ENST00000636147 GHRHRQ02643 423 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 CDK5R2Q13319 367 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 PHKG1Q16816 387 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 INAVAQ3KP66 663 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 CEP78Q5JTW2 689 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 GNASQ5JWF2 1037 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 OR2T5Q6IEZ7 315 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 RANBP10Q6VN20 620 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 TMPRSS11AQ6ZMR5 421 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 CYP2U1Q7Z449 544 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 KRT73Q86Y46 540 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 OR2T29Q8NH02 315 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 AARSD1Q9BTE6 412 aaKnown RBP10.84□□□□□ -0.67
CLN3-244ENST00000636147 NUSAP1Q9BXS6 441 aaKnown RBP10.84□□□□□ -0.67
CLN3-244ENST00000636147 TMEM245Q9H330 911 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 R3HDMLQ9H3Y0 253 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 GPN2Q9H9Y4 310 aaPredicted RBP10.84□□□□□ -0.67
CLN3-244ENST00000636147 TXNRD2Q9NNW7 524 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 SMPD4Q9NXE4 827 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 IL37Q9NZH6 218 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 VAPAQ9P0L0 249 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 PEX16Q9Y5Y5 336 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 USP3Q9Y6I4 520 aa10.84□□□□□ -0.67
CLN3-244ENST00000636147 C17orf102A2RUQ5 167 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 UPK3BL1B0FP48 263 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 FAM47E-STBD1D6RA91 191 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 UPK3BL2E5RIL1 263 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 F8W810 466 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 DYRK3O43781 588 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 ALPLP05186 524 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 TCF3P15923 654 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 ITGALP20701 1170 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 DNAJB1P25685 340 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 CD40LGP29965 261 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 DCTP40126 519 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 ARCN1P48444 511 aaKnown RBP10.83□□□□□ -0.68
CLN3-244ENST00000636147 RHOAP61586 193 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 EMX2Q04743 252 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 C1DQ13901 141 aaKnown RBP10.83□□□□□ -0.68
CLN3-244ENST00000636147 OXA1LQ15070 435 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 KCTD11Q693B1 232 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 PLET1Q6UQ28 207 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 CDH24Q86UP0 819 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 FAM86B1Q8N7N1 296 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 ASCC1Q8N9N2 400 aaKnown RBP10.83□□□□□ -0.68
CLN3-244ENST00000636147 GPR156Q8NFN8 814 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 SLC22A17Q8WUG5 538 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 ISL2Q96A47 359 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 KIAA1191Q96A73 305 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 ITPAQ9BY32 194 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 HDHD2Q9H0R4 259 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 NSUN3Q9H649 340 aaKnown RBP10.83□□□□□ -0.68
CLN3-244ENST00000636147 ZBTB20Q9HC78 741 aaPredicted RBP10.83□□□□□ -0.68
CLN3-244ENST00000636147 ZBTB42B2RXF5 422 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 GABRDO14764 452 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 SUV39H1O43463 412 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 OR1I1O60431 355 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 SULT1C4O75897 302 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 SEC14L2O76054 403 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 NDST3O95803 873 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 OPN1SWP03999 348 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 WARSP23381 471 aaKnown RBP10.83□□□□□ -0.68
CLN3-244ENST00000636147 KRT20P35900 424 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 TGFBR1P36897 503 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 ACVRL1P37023 503 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 HUNKP57058 714 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 ACSM2AQ08AH3 577 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 AQP6Q13520 282 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 QPRTQ15274 297 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 C18orf21Q32NC0 220 aaPredicted RBP10.83□□□□□ -0.68
CLN3-244ENST00000636147 USP41Q3LFD5 358 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 ACSM2BQ68CK6 577 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 SYCE2Q6PIF2 218 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 BRSK1Q8TDC3 778 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 DIRAS2Q96HU8 199 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 ANKMY1Q9P2S6 941 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 TMCC3Q9ULS5 477 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 OR6C70A6NIJ9 312 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 HNRNPCL2B2RXH8 293 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 ZNF197O14709 1029 aa10.83□□□□□ -0.68
CLN3-244ENST00000636147 EEDO75530 441 aaKnown RBP10.83□□□□□ -0.68
CLN3-244ENST00000636147 MAPK1P28482 360 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms