RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 PTGES3LE9PB15 166 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 CILPO75339 1184 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 IGFBP6P24592 240 aaPredicted RBP10.05□□□□□ -0.8
VPS39-214ENST00000614932 MIPP30301 263 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 CDKN2BP42772 138 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 RFX2P48378 723 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 PER3P56645 1201 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 MEP1AQ16819 746 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 TFDP3Q5H9I0 405 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 SPANXN2Q5MJ10 180 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 PDSS1Q5T2R2 415 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 GK5Q6ZS86 529 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 GPRIN3Q6ZVF9 776 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 DNAJB3Q8WWF6 145 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 RBPMSQ93062 196 aaKnown RBP10.05□□□□□ -0.8
VPS39-214ENST00000614932 ELMO2Q96JJ3 720 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 SERPINB11Q96P15 392 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 TINF2Q9BSI4 451 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 CINPQ9BW66 212 aaPredicted RBP10.05□□□□□ -0.8
VPS39-214ENST00000614932 SLC19A3Q9BZV2 496 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 NXF2Q9GZY0 626 aaKnown RBP10.05□□□□□ -0.8
VPS39-214ENST00000614932 KATNBL1Q9H079 304 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 SHARPINQ9H0F6 387 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 FAM83DQ9H4H8 585 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 LRRC4Q9HBW1 653 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 SPATA6Q9NWH7 488 aaPredicted RBP10.05□□□□□ -0.8
VPS39-214ENST00000614932 ZNF639Q9UID6 485 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 GJD2Q9UKL4 321 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 F5H423 210 aaPredicted RBP10.05□□□□□ -0.8
VPS39-214ENST00000614932 TNFRSF21O75509 655 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 SRP72O76094 671 aaKnown RBP10.05□□□□□ -0.8
VPS39-214ENST00000614932 LSM8O95777 96 aaKnown RBP10.05□□□□□ -0.8
VPS39-214ENST00000614932 CYP2B6P20813 491 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 KCNA5P22460 613 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 RFC2P35250 354 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 TGFBR1P36897 503 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 ATXN1P54253 815 aaKnown RBP10.05□□□□□ -0.8
VPS39-214ENST00000614932 CDH17Q12864 832 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 FADDQ13158 208 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 GRK1Q15835 563 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 KIF19Q2TAC6 998 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 SULT1C3Q6IMI6 304 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 TRNP1Q6NT89 227 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 TEX261Q6UWH6 196 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 STX12Q86Y82 276 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 SPPL2CQ8IUH8 684 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 AMER2Q8N7J2 671 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 OR6B3Q8NGW1 331 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 CLEC4CQ8WTT0 213 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 TMEM40Q8WWA1 233 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 SIGLEC10Q96LC7 697 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 PELOQ9BRX2 385 aaKnown RBP10.05□□□□□ -0.8
VPS39-214ENST00000614932 BCO2Q9BYV7 579 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 RACGAP1Q9H0H5 632 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 RNF39Q9H2S5 420 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 LDAHQ9H6V9 325 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 PPP1R14DQ9NXH3 145 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 FLRT1Q9NZU1 646 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 TSR3Q9UJK0 312 aaKnown RBP10.05□□□□□ -0.8
VPS39-214ENST00000614932 CDYLQ9Y232 598 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 NME7Q9Y5B8 376 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 PEX16Q9Y5Y5 336 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 U3KQ87 197 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 HTTP42858 3142 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 SIP14410 1827 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 EEF2KO00418 725 aaKnown RBP10.04□□□□□ -0.8
VPS39-214ENST00000614932 MED7O43513 233 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 PSIP1O75475 530 aaKnown RBP10.04□□□□□ -0.8
VPS39-214ENST00000614932 CNTN5O94779 1100 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 PRKCGP05129 697 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 GLAP06280 429 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 FABP1P07148 127 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 RRASP10301 218 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 ZP3P21754 424 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 HLA-DMAP28067 261 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 ADORA2BP29275 332 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 ETV6P41212 452 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 CCR10P46092 362 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 HSD17B7P56937 341 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 ALDH6A1Q02252 535 aaKnown RBP10.04□□□□□ -0.8
VPS39-214ENST00000614932 PIGHQ14442 188 aaPredicted RBP10.04□□□□□ -0.8
VPS39-214ENST00000614932 POU4F3Q15319 338 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 GOLGA7BQ2TAP0 167 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 TTC23Q5W5X9 447 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 FAM183BPQ6ZVS7 135 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 TIGD4Q8IY51 512 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 UNC5BQ8IZJ1 945 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 OR8H2Q8N162 312 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 MPP5Q8N3R9 675 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 UBASH3BQ8TF42 649 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 STON2Q8WXE9 905 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 NDRG1Q92597 394 aaKnown RBP10.04□□□□□ -0.8
VPS39-214ENST00000614932 RADILQ96JH8 1075 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 PEBP4Q96S96 227 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 SDHCQ99643 169 aaPredicted RBP10.04□□□□□ -0.8
VPS39-214ENST00000614932 SMOC2Q9H3U7 446 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 UCK1Q9HA47 277 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 SYNJ2BP-COX16A0A087WUM0 186 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 ALPPP05187 535 aa10.04□□□□□ -0.8
VPS39-214ENST00000614932 GPIP06744 558 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms