RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 CFAP61Q8NHU2 1237 aa13.92□□□□□ -0.18
USP39-220ENST00000613444 TRPC4APQ8TEL6 797 aa13.92□□□□□ -0.18
USP39-220ENST00000613444 AGAP11Q8TF27 550 aa13.92□□□□□ -0.18
USP39-220ENST00000613444 OR1E3Q8WZA6 343 aa13.92□□□□□ -0.18
USP39-220ENST00000613444 UHRF1Q96T88 793 aaPredicted RBP13.92□□□□□ -0.18
USP39-220ENST00000613444 EGFL8Q99944 293 aa13.92□□□□□ -0.18
USP39-220ENST00000613444 CD244Q9BZW8 370 aa13.92□□□□□ -0.18
USP39-220ENST00000613444 ZDHHC5Q9C0B5 715 aa13.92□□□□□ -0.18
USP39-220ENST00000613444 SEMA4BQ9NPR2 832 aaPredicted RBP13.92□□□□□ -0.18
USP39-220ENST00000613444 GPR27Q9NS67 375 aa13.92□□□□□ -0.18
USP39-220ENST00000613444 PLEKHM1Q9Y4G2 1056 aa13.92□□□□□ -0.18
USP39-220ENST00000613444 FANCMQ8IYD8 2048 aa13.92□□□□□ -0.18
USP39-220ENST00000613444 A0A1W2PPC4 97 aa13.92□□□□□ -0.18
USP39-220ENST00000613444 C1orf105O95561 183 aa13.92□□□□□ -0.18
USP39-220ENST00000613444 ACP5P13686 325 aa13.92□□□□□ -0.18
USP39-220ENST00000613444 PRDX3P30048 256 aaKnown RBP13.92□□□□□ -0.18
USP39-220ENST00000613444 GDF5P43026 501 aa13.92□□□□□ -0.18
USP39-220ENST00000613444 MAPK9P45984 424 aa13.92□□□□□ -0.18
USP39-220ENST00000613444 HK2P52789 917 aa13.92□□□□□ -0.18
USP39-220ENST00000613444 SIGLEC14Q08ET2 396 aa13.92□□□□□ -0.18
USP39-220ENST00000613444 TUBB3Q13509 450 aa13.92□□□□□ -0.18
USP39-220ENST00000613444 VWA5B1Q5TIE3 1220 aa13.92□□□□□ -0.18
USP39-220ENST00000613444 METTL2BQ6P1Q9 378 aaKnown RBP13.92□□□□□ -0.18
USP39-220ENST00000613444 CHST15Q7LFX5 561 aaPredicted RBP13.92□□□□□ -0.18
USP39-220ENST00000613444 PDZD3Q86UT5 571 aa13.92□□□□□ -0.18
USP39-220ENST00000613444 SLC22A18ASQ8N1D0 253 aa13.92□□□□□ -0.18
USP39-220ENST00000613444 MCOLN3Q8TDD5 553 aa13.92□□□□□ -0.18
USP39-220ENST00000613444 PDXPQ96GD0 296 aa13.92□□□□□ -0.18
USP39-220ENST00000613444 IER2Q9BTL4 223 aa13.92□□□□□ -0.18
USP39-220ENST00000613444 TRIM54Q9BYV2 358 aa13.92□□□□□ -0.18
USP39-220ENST00000613444 ARHGEF17Q96PE2 2063 aaPredicted RBP13.91□□□□□ -0.18
USP39-220ENST00000613444 TOR1BO14657 336 aa13.91□□□□□ -0.18
USP39-220ENST00000613444 HDAC3O15379 428 aa13.91□□□□□ -0.18
USP39-220ENST00000613444 FGF4P08620 206 aa13.91□□□□□ -0.18
USP39-220ENST00000613444 HIST1H2AGP0C0S8 130 aaPredicted RBP13.91□□□□□ -0.18
USP39-220ENST00000613444 HIST1H2ADP20671 130 aa13.91□□□□□ -0.18
USP39-220ENST00000613444 NUDT1P36639 197 aa13.91□□□□□ -0.18
USP39-220ENST00000613444 BDKRB1P46663 353 aa13.91□□□□□ -0.18
USP39-220ENST00000613444 SLC6A12P48065 614 aa13.91□□□□□ -0.18
USP39-220ENST00000613444 IDH3AP50213 366 aa13.91□□□□□ -0.18
USP39-220ENST00000613444 CCR3P51677 355 aa13.91□□□□□ -0.18
USP39-220ENST00000613444 UGT3A2Q3SY77 523 aa13.91□□□□□ -0.18
USP39-220ENST00000613444 EPGNQ6UW88 154 aa13.91□□□□□ -0.18
USP39-220ENST00000613444 Q6ZSR6 202 aa13.91□□□□□ -0.18
USP39-220ENST00000613444 ZNF771Q7L3S4 317 aaPredicted RBP13.91□□□□□ -0.18
USP39-220ENST00000613444 GOLGA7Q7Z5G4 137 aa13.91□□□□□ -0.18
USP39-220ENST00000613444 GALNT13Q8IUC8 556 aa13.91□□□□□ -0.18
USP39-220ENST00000613444 HIST1H2AHQ96KK5 128 aa13.91□□□□□ -0.18
USP39-220ENST00000613444 WDR92Q96MX6 357 aa13.91□□□□□ -0.18
USP39-220ENST00000613444 HIST1H2AJQ99878 128 aa13.91□□□□□ -0.18
USP39-220ENST00000613444 PLCD4Q9BRC7 762 aa13.91□□□□□ -0.18
USP39-220ENST00000613444 H2AFJQ9BTM1 129 aa13.91□□□□□ -0.18
USP39-220ENST00000613444 KLC4Q9NSK0 619 aa13.91□□□□□ -0.18
USP39-220ENST00000613444 ABCF3Q9NUQ8 709 aa13.91□□□□□ -0.18
USP39-220ENST00000613444 DNAJC28Q9NX36 388 aa13.91□□□□□ -0.18
USP39-220ENST00000613444 WWOXQ9NZC7 414 aa13.91□□□□□ -0.18
USP39-220ENST00000613444 INVSQ9Y283 1065 aa13.91□□□□□ -0.18
USP39-220ENST00000613444 PCM1Q15154 2024 aa13.91□□□□□ -0.18
USP39-220ENST00000613444 OR7A17O14581 309 aa13.9□□□□□ -0.18
USP39-220ENST00000613444 CATP04040 527 aaKnown RBP13.9□□□□□ -0.18
USP39-220ENST00000613444 HNMTP50135 292 aa13.9□□□□□ -0.18
USP39-220ENST00000613444 FOXA1P55317 472 aa13.9□□□□□ -0.18
USP39-220ENST00000613444 IFT88Q13099 833 aa13.9□□□□□ -0.18
USP39-220ENST00000613444 ENPP7Q6UWV6 458 aa13.9□□□□□ -0.18
USP39-220ENST00000613444 TCAIMQ8N3R3 496 aa13.9□□□□□ -0.18
USP39-220ENST00000613444 FITM2Q8N6M3 262 aa13.9□□□□□ -0.18
USP39-220ENST00000613444 OR13H1Q8NG92 308 aa13.9□□□□□ -0.18
USP39-220ENST00000613444 OR52B6Q8NGF0 335 aa13.9□□□□□ -0.18
USP39-220ENST00000613444 EDAQ92838 391 aa13.9□□□□□ -0.18
USP39-220ENST00000613444 FBXL8Q96CD0 374 aa13.9□□□□□ -0.18
USP39-220ENST00000613444 FOPNLQ96NB1 174 aa13.9□□□□□ -0.18
USP39-220ENST00000613444 HGH1Q9BTY7 390 aa13.9□□□□□ -0.18
USP39-220ENST00000613444 MID1IP1Q9NPA3 183 aa13.9□□□□□ -0.18
USP39-220ENST00000613444 TRAF6Q9Y4K3 522 aa13.9□□□□□ -0.18
USP39-220ENST00000613444 METTL12A8MUP2 240 aa13.9□□□□□ -0.18
USP39-220ENST00000613444 SLCO1B7G3V0H7 640 aa13.9□□□□□ -0.18
USP39-220ENST00000613444 TNFRSF10CO14798 259 aa13.9□□□□□ -0.18
USP39-220ENST00000613444 MLYCDO95822 493 aa13.9□□□□□ -0.18
USP39-220ENST00000613444 EPORP19235 508 aa13.9□□□□□ -0.18
USP39-220ENST00000613444 KELP23276 732 aa13.9□□□□□ -0.18
USP39-220ENST00000613444 GNPDA1P46926 289 aa13.9□□□□□ -0.18
USP39-220ENST00000613444 RABIFP47224 123 aa13.9□□□□□ -0.18
USP39-220ENST00000613444 DMWDQ09019 674 aa13.9□□□□□ -0.18
USP39-220ENST00000613444 GTF2H2Q13888 395 aa13.9□□□□□ -0.18
USP39-220ENST00000613444 SLC9B1Q4ZJI4 515 aa13.9□□□□□ -0.18
USP39-220ENST00000613444 CAPRIN2Q6IMN6 1127 aaKnown RBP13.9□□□□□ -0.18
USP39-220ENST00000613444 GTF2H2CQ6P1K8 395 aa13.9□□□□□ -0.18
USP39-220ENST00000613444 TRPM8Q7Z2W7 1104 aa13.9□□□□□ -0.18
USP39-220ENST00000613444 SYVN1Q86TM6 617 aa13.9□□□□□ -0.18
USP39-220ENST00000613444 CADM4Q8NFZ8 388 aa13.9□□□□□ -0.18
USP39-220ENST00000613444 SKA1Q96BD8 255 aa13.9□□□□□ -0.18
USP39-220ENST00000613444 ZNF382Q96SR6 550 aa13.9□□□□□ -0.18
USP39-220ENST00000613444 PKP4Q99569 1192 aa13.9□□□□□ -0.18
USP39-220ENST00000613444 PCED1AQ9H1Q7 454 aa13.9□□□□□ -0.18
USP39-220ENST00000613444 STN1Q9H668 368 aaKnown RBP13.9□□□□□ -0.18
USP39-220ENST00000613444 VTI1BQ9UEU0 232 aa13.9□□□□□ -0.18
USP39-220ENST00000613444 ACSL5Q9ULC5 683 aa13.9□□□□□ -0.18
USP39-220ENST00000613444 KCNK6Q9Y257 313 aa13.9□□□□□ -0.18
USP39-220ENST00000613444 WDR37Q9Y2I8 494 aa13.9□□□□□ -0.18
USP39-220ENST00000613444 TDRD6O60522 2096 aaKnown RBP13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms