RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 HECTD2Q5U5R9 776 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 ZNF549Q6P9A3 640 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 TIFABQ6ZNK6 161 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 PRICKLE2Q7Z3G6 844 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 SLITRK4Q8IW52 837 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 PELI3Q8N2H9 469 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 NXPE1Q8N323 547 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 EXD3Q8N9H8 876 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 NAT14Q8WUY8 206 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 AP2M1Q96CW1 435 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 PKNOX2Q96KN3 472 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 SMC6Q96SB8 1091 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 OLFM1Q99784 485 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 ARHGAP9Q9BRR9 750 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 FAM117AQ9C073 453 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 TMEM168Q9H0V1 697 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 CYP4F12Q9HCS2 524 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 SNX15Q9NRS6 342 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 RAD18Q9NS91 495 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 OGFRQ9NZT2 677 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 SENP1Q9P0U3 644 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 LRIT1Q9P2V4 623 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 MOSPD1Q9UJG1 213 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 TMPRSS11EQ9UL52 423 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 PCDHB11Q9Y5F2 797 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 HEMK1Q9Y5R4 338 aaPredicted RBP12.43□□□□□ -0.42
UPF1-208ENST00000600012 ACTL7BQ9Y614 415 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 RNF215Q9Y6U7 377 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 TLN1Q9Y490 2541 aaKnown RBP12.43□□□□□ -0.42
UPF1-208ENST00000600012 SDK2Q58EX2 2172 aa12.42□□□□□ -0.42
UPF1-208ENST00000600012 PRAMEF33A0A0G2JMD5 474 aa12.42□□□□□ -0.42
UPF1-208ENST00000600012 PRSS38A1L453 326 aa12.42□□□□□ -0.42
UPF1-208ENST00000600012 RGSL1A5PLK6 1076 aa12.42□□□□□ -0.42
UPF1-208ENST00000600012 AGAP14A8MT82 685 aa12.42□□□□□ -0.42
UPF1-208ENST00000600012 FADS2P1A8MWK0 482 aa12.42□□□□□ -0.42
UPF1-208ENST00000600012 PYCARD-AS1I3L0S3 204 aa12.42□□□□□ -0.42
UPF1-208ENST00000600012 PHGDHO43175 533 aaKnown RBP12.42□□□□□ -0.42
UPF1-208ENST00000600012 PRAMEF10O60809 474 aa12.42□□□□□ -0.42
UPF1-208ENST00000600012 MYCLP1P12525 358 aaPredicted RBP12.42□□□□□ -0.42
UPF1-208ENST00000600012 ACRV1P26436 265 aa12.42□□□□□ -0.42
UPF1-208ENST00000600012 CD82P27701 267 aa12.42□□□□□ -0.42
UPF1-208ENST00000600012 FMO4P31512 558 aa12.42□□□□□ -0.42
UPF1-208ENST00000600012 ETV5P41161 510 aa12.42□□□□□ -0.42
UPF1-208ENST00000600012 MAGEA12P43365 314 aa12.42□□□□□ -0.42
UPF1-208ENST00000600012 ATP1A2P50993 1020 aa12.42□□□□□ -0.42
UPF1-208ENST00000600012 GYS2P54840 703 aa12.42□□□□□ -0.42
UPF1-208ENST00000600012 TAS2R39P59534 338 aa12.42□□□□□ -0.42
UPF1-208ENST00000600012 PPP2R2AP63151 447 aa12.42□□□□□ -0.42
UPF1-208ENST00000600012 SRSF6Q13247 344 aaKnown RBP12.42□□□□□ -0.42
UPF1-208ENST00000600012 ITGA9Q13797 1035 aa12.42□□□□□ -0.42
UPF1-208ENST00000600012 ZNF460Q14592 562 aa12.42□□□□□ -0.42
UPF1-208ENST00000600012 USP10Q14694 798 aaKnown RBP12.42□□□□□ -0.42
UPF1-208ENST00000600012 LINC00303Q3SY05 128 aa12.42□□□□□ -0.42
UPF1-208ENST00000600012 GPR33Q49SQ1 333 aa12.42□□□□□ -0.42
UPF1-208ENST00000600012 PHF19Q5T6S3 580 aa12.42□□□□□ -0.42
UPF1-208ENST00000600012 RNF187Q5TA31 235 aaPredicted RBP12.42□□□□□ -0.42
UPF1-208ENST00000600012 PNCKQ6P2M8 343 aa12.42□□□□□ -0.42
UPF1-208ENST00000600012 CERS6Q6ZMG9 384 aa12.42□□□□□ -0.42
UPF1-208ENST00000600012 SH2D5Q6ZV89 423 aa12.42□□□□□ -0.42
UPF1-208ENST00000600012 CEP97Q8IW35 865 aa12.42□□□□□ -0.42
UPF1-208ENST00000600012 SFTPA2Q8IWL1 248 aa12.42□□□□□ -0.42
UPF1-208ENST00000600012 NRSN1Q8IZ57 195 aa12.42□□□□□ -0.42
UPF1-208ENST00000600012 TRAM1L1Q8N609 369 aa12.42□□□□□ -0.42
UPF1-208ENST00000600012 ZSCAN1Q8NBB4 408 aa12.42□□□□□ -0.42
UPF1-208ENST00000600012 CCL4L1Q8NHW4 92 aa12.42□□□□□ -0.42
UPF1-208ENST00000600012 FAM76AQ8TAV0 307 aa12.42□□□□□ -0.42
UPF1-208ENST00000600012 ISL2Q96A47 359 aa12.42□□□□□ -0.42
UPF1-208ENST00000600012 TCF12Q99081 682 aa12.42□□□□□ -0.42
UPF1-208ENST00000600012 AARSD1Q9BTE6 412 aaKnown RBP12.42□□□□□ -0.42
UPF1-208ENST00000600012 B3GNT4Q9C0J1 378 aa12.42□□□□□ -0.42
UPF1-208ENST00000600012 KCNK9Q9NPC2 374 aa12.42□□□□□ -0.42
UPF1-208ENST00000600012 KCTD5Q9NXV2 234 aa12.42□□□□□ -0.42
UPF1-208ENST00000600012 AKAP7Q9P0M2 348 aaPredicted RBP12.42□□□□□ -0.42
UPF1-208ENST00000600012 PCDHGA4Q9Y5G9 962 aa12.42□□□□□ -0.42
UPF1-208ENST00000600012 ZFC3H1O60293 1989 aaKnown RBP12.41□□□□□ -0.42
UPF1-208ENST00000600012 ANKRD12Q6UB98 2062 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 TMEM120BA0PK00 339 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 PFDN6O15212 129 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 ZW10O43264 779 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 CPNE6O95741 557 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 SFTPCP11686 197 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 TYK2P29597 1187 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 MAPK10P53779 464 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 CDKN2DP55273 166 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 B4GALNT1Q00973 533 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 IRF9Q00978 393 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 SLC18A2Q05940 514 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 ILF3Q12906 894 aaKnown RBP eCLIP12.41□□□□□ -0.42
UPF1-208ENST00000600012 ITIH4Q14624 930 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 CLPPQ16740 277 aaPredicted RBP12.41□□□□□ -0.42
UPF1-208ENST00000600012 CTSL3PQ5NE16 218 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 ZNF648Q5T619 568 aaPredicted RBP12.41□□□□□ -0.42
UPF1-208ENST00000600012 GPRC6AQ5T6X5 926 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 TMEM164Q5U3C3 297 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 LYPLAL1Q5VWZ2 237 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 RAET1GQ6H3X3 334 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 FAM45BPQ6NSW5 357 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 ZNF765Q7L2R6 523 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 TMPRSS9Q7Z410 1059 aa12.41□□□□□ -0.42
UPF1-208ENST00000600012 PIM3Q86V86 326 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms