RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 PCDHGA2Q9Y5H1 932 aa15.09■□□□□ 0.01
UPF1-206ENST00000598471 TNPO3Q9Y5L0 923 aaKnown RBP15.09■□□□□ 0.01
UPF1-206ENST00000598471 SLCO1B1Q9Y6L6 691 aa15.09■□□□□ 0.01
UPF1-206ENST00000598471 KMT2EQ8IZD2 1858 aa15.08■□□□□ 0.01
UPF1-206ENST00000598471 ZNF318Q5VUA4 2279 aa15.08■□□□□ 0
UPF1-206ENST00000598471 TCP11X1B4DZS4 312 aa15.08■□□□□ 0
UPF1-206ENST00000598471 SCAMP1O15126 338 aa15.08■□□□□ 0
UPF1-206ENST00000598471 SNUPNO95149 360 aaKnown RBP15.08■□□□□ 0
UPF1-206ENST00000598471 GUCA1CO95843 209 aa15.08■□□□□ 0
UPF1-206ENST00000598471 SP9P0CG40 484 aa15.08■□□□□ 0
UPF1-206ENST00000598471 MTHFD2P13995 350 aa15.08■□□□□ 0
UPF1-206ENST00000598471 ITPKAP23677 461 aa15.08■□□□□ 0
UPF1-206ENST00000598471 ACADLP28330 430 aa15.08■□□□□ 0
UPF1-206ENST00000598471 HNMTP50135 292 aa15.08■□□□□ 0
UPF1-206ENST00000598471 HERVK_113P63132 956 aa15.08■□□□□ 0
UPF1-206ENST00000598471 PHKG1Q16816 387 aa15.08■□□□□ 0
UPF1-206ENST00000598471 XKR5Q6UX68 686 aa15.08■□□□□ 0
UPF1-206ENST00000598471 RABEPKQ7Z6M1 372 aa15.08■□□□□ 0
UPF1-206ENST00000598471 CCNYL1Q8N7R7 359 aa15.08■□□□□ 0
UPF1-206ENST00000598471 ATL1Q8WXF7 558 aa15.08■□□□□ 0
UPF1-206ENST00000598471 TFGQ92734 400 aaPredicted RBP15.08■□□□□ 0
UPF1-206ENST00000598471 L3HYPDHQ96EM0 354 aa15.08■□□□□ 0
UPF1-206ENST00000598471 CHMP6Q96FZ7 201 aa15.08■□□□□ 0
UPF1-206ENST00000598471 ZC3H10Q96K80 434 aaKnown RBP15.08■□□□□ 0
UPF1-206ENST00000598471 RMDN2Q96LZ7 410 aa15.08■□□□□ 0
UPF1-206ENST00000598471 ERVK-6Q9BXR3 956 aa15.08■□□□□ 0
UPF1-206ENST00000598471 ZDHHC5Q9C0B5 715 aa15.08■□□□□ 0
UPF1-206ENST00000598471 TMEM168Q9H0V1 697 aa15.08■□□□□ 0
UPF1-206ENST00000598471 TRIT1Q9H3H1 467 aaKnown RBP15.08■□□□□ 0
UPF1-206ENST00000598471 WWOXQ9NZC7 414 aa15.08■□□□□ 0
UPF1-206ENST00000598471 APOBEC3BQ9UH17 382 aaKnown RBP15.08■□□□□ 0
UPF1-206ENST00000598471 PSMD13Q9UNM6 376 aa15.08■□□□□ 0
UPF1-206ENST00000598471 PLEKHM1Q9Y4G2 1056 aa15.08■□□□□ 0
UPF1-206ENST00000598471 HEBP2Q9Y5Z4 205 aa15.08■□□□□ 0
UPF1-206ENST00000598471 GMNCA6NCL1 334 aa15.07■□□□□ 0
UPF1-206ENST00000598471 PRR19A6NJB7 356 aa15.07■□□□□ 0
UPF1-206ENST00000598471 ARHGEF33A8MVX0 844 aa15.07■□□□□ 0
UPF1-206ENST00000598471 HRO43593 1189 aa15.07■□□□□ 0
UPF1-206ENST00000598471 KDM1AO60341 852 aa15.07■□□□□ 0
UPF1-206ENST00000598471 NPHS1O60500 1241 aa15.07■□□□□ 0
UPF1-206ENST00000598471 C1orf105O95561 183 aa15.07■□□□□ 0
UPF1-206ENST00000598471 CSF2P04141 144 aa15.07■□□□□ 0
UPF1-206ENST00000598471 SLC2A4P14672 509 aa15.07■□□□□ 0
UPF1-206ENST00000598471 NME1P15531 152 aaKnown RBP15.07■□□□□ 0
UPF1-206ENST00000598471 JUNDP17535 347 aa15.07■□□□□ 0
UPF1-206ENST00000598471 IMPDH1P20839 514 aa15.07■□□□□ 0
UPF1-206ENST00000598471 RPL10P27635 214 aaKnown RBP15.07■□□□□ 0
UPF1-206ENST00000598471 BDKRB1P46663 353 aa15.07■□□□□ 0
UPF1-206ENST00000598471 CSNK1EP49674 416 aaKnown RBP15.07■□□□□ 0
UPF1-206ENST00000598471 NAGLUP54802 743 aa15.07■□□□□ 0
UPF1-206ENST00000598471 BST1Q10588 318 aa15.07■□□□□ 0
UPF1-206ENST00000598471 KRT33BQ14525 404 aa15.07■□□□□ 0
UPF1-206ENST00000598471 SETDB1Q15047 1291 aa15.07■□□□□ 0
UPF1-206ENST00000598471 UAP1L1Q3KQV9 507 aa15.07■□□□□ 0
UPF1-206ENST00000598471 CAPRIN2Q6IMN6 1127 aaKnown RBP15.07■□□□□ 0
UPF1-206ENST00000598471 METTL2BQ6P1Q9 378 aaKnown RBP15.07■□□□□ 0
UPF1-206ENST00000598471 LAYNQ6UX15 382 aa15.07■□□□□ 0
UPF1-206ENST00000598471 WASH2PQ6VEQ5 465 aa15.07■□□□□ 0
UPF1-206ENST00000598471 ZCCHC23Q6ZST2 131 aa15.07■□□□□ 0
UPF1-206ENST00000598471 DCUN1D3Q8IWE4 304 aa15.07■□□□□ 0
UPF1-206ENST00000598471 ZBTB44Q8NCP5 570 aa15.07■□□□□ 0
UPF1-206ENST00000598471 GPBAR1Q8TDU6 330 aa15.07■□□□□ 0
UPF1-206ENST00000598471 PPP4R1Q8TF05 950 aa15.07■□□□□ 0
UPF1-206ENST00000598471 DLG3Q92796 817 aa15.07■□□□□ 0
UPF1-206ENST00000598471 CCDC138Q96M89 665 aa15.07■□□□□ 0
UPF1-206ENST00000598471 C12orf66Q96MD2 445 aa15.07■□□□□ 0
UPF1-206ENST00000598471 TMEM237Q96Q45 408 aa15.07■□□□□ 0
UPF1-206ENST00000598471 PRRX2Q99811 253 aa15.07■□□□□ 0
UPF1-206ENST00000598471 TRMOQ9BU70 441 aa15.07■□□□□ 0
UPF1-206ENST00000598471 GATA5Q9BWX5 397 aaPredicted RBP15.07■□□□□ 0
UPF1-206ENST00000598471 WASH6PQ9NQA3 447 aa15.07■□□□□ 0
UPF1-206ENST00000598471 THAP1Q9NVV9 213 aa15.07■□□□□ 0
UPF1-206ENST00000598471 HSPA4LO95757 839 aa15.06■□□□□ 0
UPF1-206ENST00000598471 AK4P27144 223 aaPredicted RBP15.06■□□□□ 0
UPF1-206ENST00000598471 NDUFS1P28331 727 aa15.06■□□□□ 0
UPF1-206ENST00000598471 EEF1DP29692 281 aaKnown RBP15.06■□□□□ 0
UPF1-206ENST00000598471 HOXD12P35452 270 aa15.06■□□□□ 0
UPF1-206ENST00000598471 ABCE1P61221 599 aaKnown RBP15.06■□□□□ 0
UPF1-206ENST00000598471 HNRNPKP61978 463 aaKnown RBP eCLIP15.06■□□□□ 0
UPF1-206ENST00000598471 SIM2Q14190 667 aaPredicted RBP15.06■□□□□ 0
UPF1-206ENST00000598471 RCN2Q14257 317 aa15.06■□□□□ 0
UPF1-206ENST00000598471 ELOCQ15369 112 aa15.06■□□□□ 0
UPF1-206ENST00000598471 ZNF678Q5SXM1 525 aa15.06■□□□□ 0
UPF1-206ENST00000598471 ANKS6Q68DC2 871 aa15.06■□□□□ 0
UPF1-206ENST00000598471 SLC30A9Q6PML9 568 aa15.06■□□□□ 0
UPF1-206ENST00000598471 SPATS2Q86XZ4 545 aaKnown RBP15.06■□□□□ 0
UPF1-206ENST00000598471 TBC1D21Q8IYX1 336 aa15.06■□□□□ 0
UPF1-206ENST00000598471 RAB42Q8N4Z0 105 aa15.06■□□□□ 0
UPF1-206ENST00000598471 UBTD2Q8WUN7 234 aa15.06■□□□□ 0
UPF1-206ENST00000598471 RAD51AP1Q96B01 352 aa15.06■□□□□ 0
UPF1-206ENST00000598471 RHBDF1Q96CC6 855 aa15.06■□□□□ 0
UPF1-206ENST00000598471 FBXL8Q96CD0 374 aa15.06■□□□□ 0
UPF1-206ENST00000598471 CNDP1Q96KN2 507 aa15.06■□□□□ 0
UPF1-206ENST00000598471 KCNH6Q9H252 994 aa15.06■□□□□ 0
UPF1-206ENST00000598471 EML4Q9HC35 981 aaKnown RBP15.06■□□□□ 0
UPF1-206ENST00000598471 IMP3Q9NV31 184 aaKnown RBP15.06■□□□□ 0
UPF1-206ENST00000598471 PSD3Q9NYI0 1048 aa15.06■□□□□ 0
UPF1-206ENST00000598471 SPASTQ9UBP0 616 aa15.06■□□□□ 0
UPF1-206ENST00000598471 PTBP2Q9UKA9 531 aaKnown RBP15.06■□□□□ 0
UPF1-206ENST00000598471 PCOLCE2Q9UKZ9 415 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms