RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 ITGB6P18564 788 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 ATP5DP30049 168 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 CASQ1P31415 396 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 SLC1A2P43004 574 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 UCNP55089 124 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 EIF3BP55884 814 aaKnown RBP15.67■□□□□ 0.1
TRIM28-213ENST00000598355 BRD3Q15059 726 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 ZNF789Q5FWF6 425 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 PLEKHS1Q5SXH7 462 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 DCAF12Q5T6F0 453 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 CACHD1Q5VU97 1274 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 PTRHD1Q6GMV3 140 aaKnown RBP15.67■□□□□ 0.1
TRIM28-213ENST00000598355 C19orf48Q6RUI8 117 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 UNC5DQ6UXZ4 953 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 CEACAM20Q6UY09 585 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 FAM92BQ6ZTR7 304 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 DENND6AQ8IWF6 608 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 CNTN4Q8IWV2 1026 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 ADGRF3Q8IZF5 1079 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 SERBP1Q8NC51 408 aaKnown RBP eCLIP15.67■□□□□ 0.13e-8■■■■■ 32
TRIM28-213ENST00000598355 PHC3Q8NDX5 983 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 LCN9Q8WX39 176 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 LRRC39Q96DD0 335 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 SNF8Q96H20 258 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 FERD3LQ96RJ6 166 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 KRT12Q99456 494 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 NRTNQ99748 197 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 MAP3K3Q99759 626 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 PITPNM3Q9BZ71 974 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 TRIT1Q9H3H1 467 aaKnown RBP15.67■□□□□ 0.1
TRIM28-213ENST00000598355 APMAPQ9HDC9 416 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 POLG2Q9UHN1 485 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 ASF1AQ9Y294 204 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 BTRCQ9Y297 605 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 MED16Q9Y2X0 877 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 TMEM184BQ9Y519 407 aaPredicted RBP15.67■□□□□ 0.1
TRIM28-213ENST00000598355 MAD1L1Q9Y6D9 718 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 FER1L5A0AVI2 2057 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 PCM1Q15154 2024 aa15.67■□□□□ 0.1
TRIM28-213ENST00000598355 ATMQ13315 3056 aa15.66■□□□□ 0.1
TRIM28-213ENST00000598355 SEC16AO15027 2179 aa15.66■□□□□ 0.1
TRIM28-213ENST00000598355 FAM187AA6NFU0 413 aa15.66■□□□□ 0.1
TRIM28-213ENST00000598355 E7ESA3 106 aa15.66■□□□□ 0.1
TRIM28-213ENST00000598355 STMND1H3BQB6 276 aa15.66■□□□□ 0.1
TRIM28-213ENST00000598355 BTN3A3O00478 584 aa15.66■□□□□ 0.1
TRIM28-213ENST00000598355 PFDN6O15212 129 aa15.66■□□□□ 0.1
TRIM28-213ENST00000598355 KLK10O43240 276 aa15.66■□□□□ 0.1
TRIM28-213ENST00000598355 NIPSNAP2O75323 286 aa15.66■□□□□ 0.1
TRIM28-213ENST00000598355 BANF1O75531 89 aa15.66■□□□□ 0.1
TRIM28-213ENST00000598355 RASSF9O75901 435 aa15.66■□□□□ 0.1
TRIM28-213ENST00000598355 DLGAP3O95886 979 aa15.66■□□□□ 0.1
TRIM28-213ENST00000598355 RPL21P46778 160 aaKnown RBP15.66■□□□□ 0.1
TRIM28-213ENST00000598355 ITGA8P53708 1063 aa15.66■□□□□ 0.1
TRIM28-213ENST00000598355 HSPA14Q0VDF9 509 aa15.66■□□□□ 0.1
TRIM28-213ENST00000598355 GRB7Q14451 532 aa15.66■□□□□ 0.1
TRIM28-213ENST00000598355 KRT33BQ14525 404 aa15.66■□□□□ 0.1
TRIM28-213ENST00000598355 TMED2Q15363 201 aa15.66■□□□□ 0.1
TRIM28-213ENST00000598355 DNTTIP2Q5QJE6 756 aaKnown RBP15.66■□□□□ 0.1
TRIM28-213ENST00000598355 STEAP4Q687X5 459 aa15.66■□□□□ 0.1
TRIM28-213ENST00000598355 ZFAND4Q86XD8 727 aa15.66■□□□□ 0.1
TRIM28-213ENST00000598355 IGDCC3Q8IVU1 814 aa15.66■□□□□ 0.1
TRIM28-213ENST00000598355 D2HGDHQ8N465 521 aa15.66■□□□□ 0.1
TRIM28-213ENST00000598355 OTUD6BQ8N6M0 293 aa15.66■□□□□ 0.1
TRIM28-213ENST00000598355 OR4E2Q8NGC2 313 aa15.66■□□□□ 0.1
TRIM28-213ENST00000598355 CALML6Q8TD86 181 aa15.66■□□□□ 0.1
TRIM28-213ENST00000598355 FAM167BQ9BTA0 163 aa15.66■□□□□ 0.1
TRIM28-213ENST00000598355 SRMSQ9H3Y6 488 aa15.66■□□□□ 0.1
TRIM28-213ENST00000598355 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.66■□□□□ 0.1
TRIM28-213ENST00000598355 LHX6Q9UPM6 363 aa15.66■□□□□ 0.1
TRIM28-213ENST00000598355 TEX264Q9Y6I9 313 aa15.66■□□□□ 0.1
TRIM28-213ENST00000598355 HEATR5BQ9P2D3 2071 aa15.65■□□□□ 0.1
TRIM28-213ENST00000598355 EFCAB8A8MWE9 144 aa15.65■□□□□ 0.1
TRIM28-213ENST00000598355 MSL3P1P0C860 447 aa15.65■□□□□ 0.1
TRIM28-213ENST00000598355 FGF5P12034 268 aa15.65■□□□□ 0.1
TRIM28-213ENST00000598355 PKMP14618 531 aaKnown RBP15.65■□□□□ 0.1
TRIM28-213ENST00000598355 POLR2CP19387 275 aaPredicted RBP15.65■□□□□ 0.1
TRIM28-213ENST00000598355 SHMT2P34897 504 aa15.65■□□□□ 0.1
TRIM28-213ENST00000598355 SEPHS1P49903 392 aa15.65■□□□□ 0.1
TRIM28-213ENST00000598355 TMPRSS3P57727 454 aa15.65■□□□□ 0.1
TRIM28-213ENST00000598355 SH3BP2P78314 561 aa15.65■□□□□ 0.1
TRIM28-213ENST00000598355 PRKG2Q13237 762 aa15.65■□□□□ 0.1
TRIM28-213ENST00000598355 FRG1Q14331 258 aaKnown RBP15.65■□□□□ 0.1
TRIM28-213ENST00000598355 IL11RAQ14626 422 aa15.65■□□□□ 0.1
TRIM28-213ENST00000598355 TGIF1Q15583 401 aa15.65■□□□□ 0.1
TRIM28-213ENST00000598355 HIF1AQ16665 826 aa15.65■□□□□ 0.1
TRIM28-213ENST00000598355 SPANXN3Q5MJ09 141 aa15.65■□□□□ 0.1
TRIM28-213ENST00000598355 GALNT7Q86SF2 657 aa15.65■□□□□ 0.1
TRIM28-213ENST00000598355 KCNMB4Q86W47 210 aa15.65■□□□□ 0.1
TRIM28-213ENST00000598355 AMIGO1Q86WK6 493 aa15.65■□□□□ 0.1
TRIM28-213ENST00000598355 DCUN1D3Q8IWE4 304 aa15.65■□□□□ 0.1
TRIM28-213ENST00000598355 UNC5BQ8IZJ1 945 aa15.65■□□□□ 0.1
TRIM28-213ENST00000598355 PDIK1LQ8N165 341 aa15.65■□□□□ 0.1
TRIM28-213ENST00000598355 FLVCR1-AS1Q8TAF5 88 aa15.65■□□□□ 0.1
TRIM28-213ENST00000598355 C1GALT1Q9NS00 363 aa15.65■□□□□ 0.1
TRIM28-213ENST00000598355 C20orf96Q9NUD7 363 aaPredicted RBP15.65■□□□□ 0.1
TRIM28-213ENST00000598355 OR6C2Q9NZP2 312 aa15.65■□□□□ 0.1
TRIM28-213ENST00000598355 KLHL42Q9P2K6 505 aa15.65■□□□□ 0.1
TRIM28-213ENST00000598355 PILRAQ9UKJ1 303 aa15.65■□□□□ 0.1
TRIM28-213ENST00000598355 FBXO5Q9UKT4 447 aa15.65■□□□□ 0.1
TRIM28-213ENST00000598355 CRYL1Q9Y2S2 319 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms