RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 SRP72O76094 671 aaKnown RBP12.14□□□□□ -0.47
TRIM28-212ENST00000597995 POLBP06746 335 aa12.14□□□□□ -0.47
TRIM28-212ENST00000597995 HBQ1P09105 142 aa12.14□□□□□ -0.47
TRIM28-212ENST00000597995 RNF224P0DH78 156 aa12.14□□□□□ -0.47
TRIM28-212ENST00000597995 RALBP11234 206 aa12.14□□□□□ -0.47
TRIM28-212ENST00000597995 CYP2A7P20853 494 aa12.14□□□□□ -0.47
TRIM28-212ENST00000597995 PRDX3P30048 256 aaKnown RBP12.14□□□□□ -0.47
TRIM28-212ENST00000597995 HADHAP40939 763 aa12.14□□□□□ -0.47
TRIM28-212ENST00000597995 ARCN1P48444 511 aaKnown RBP12.14□□□□□ -0.47
TRIM28-212ENST00000597995 GDF10P55107 478 aa12.14□□□□□ -0.47
TRIM28-212ENST00000597995 SPARCL1Q14515 664 aa12.14□□□□□ -0.47
TRIM28-212ENST00000597995 NCF4Q15080 339 aa12.14□□□□□ -0.47
TRIM28-212ENST00000597995 TAF1AQ15573 450 aaPredicted RBP12.14□□□□□ -0.47
TRIM28-212ENST00000597995 PRR30Q53SZ7 412 aaPredicted RBP12.14□□□□□ -0.47
TRIM28-212ENST00000597995 KCTD11Q693B1 232 aa12.14□□□□□ -0.47
TRIM28-212ENST00000597995 ITPRIPL1Q6GPH6 555 aa12.14□□□□□ -0.47
TRIM28-212ENST00000597995 RAB43Q86YS6 212 aa12.14□□□□□ -0.47
TRIM28-212ENST00000597995 OR1L3Q8NH93 324 aa12.14□□□□□ -0.47
TRIM28-212ENST00000597995 HM13Q8TCT9 377 aa12.14□□□□□ -0.47
TRIM28-212ENST00000597995 HEXDCQ8WVB3 486 aa12.14□□□□□ -0.47
TRIM28-212ENST00000597995 LCN9Q8WX39 176 aa12.14□□□□□ -0.47
TRIM28-212ENST00000597995 ULK4Q96C45 1275 aa12.14□□□□□ -0.47
TRIM28-212ENST00000597995 DCUN1D1Q96GG9 259 aa12.14□□□□□ -0.47
TRIM28-212ENST00000597995 IP6K3Q96PC2 410 aa12.14□□□□□ -0.47
TRIM28-212ENST00000597995 C17orf62Q9BQA9 187 aa12.14□□□□□ -0.47
TRIM28-212ENST00000597995 MFRPQ9BY79 579 aa12.14□□□□□ -0.47
TRIM28-212ENST00000597995 PITPNM3Q9BZ71 974 aa12.14□□□□□ -0.47
TRIM28-212ENST00000597995 PADI2Q9Y2J8 665 aa12.14□□□□□ -0.47
TRIM28-212ENST00000597995 DOPEY1Q5JWR5 2465 aa12.13□□□□□ -0.47
TRIM28-212ENST00000597995 A6NL46 340 aa12.13□□□□□ -0.47
TRIM28-212ENST00000597995 MIF4GDA9UHW6 222 aaKnown RBP12.13□□□□□ -0.47
TRIM28-212ENST00000597995 C9J4A7 227 aa12.13□□□□□ -0.47
TRIM28-212ENST00000597995 E7EQ34 232 aa12.13□□□□□ -0.47
TRIM28-212ENST00000597995 KLHL41O60662 606 aa12.13□□□□□ -0.47
TRIM28-212ENST00000597995 METTL18O95568 372 aa12.13□□□□□ -0.47
TRIM28-212ENST00000597995 AGXTP21549 392 aa12.13□□□□□ -0.47
TRIM28-212ENST00000597995 CD151P48509 253 aa12.13□□□□□ -0.47
TRIM28-212ENST00000597995 PRLHRP49683 370 aa12.13□□□□□ -0.47
TRIM28-212ENST00000597995 XIAPP98170 497 aa12.13□□□□□ -0.47
TRIM28-212ENST00000597995 MRPL49Q13405 166 aaKnown RBP12.13□□□□□ -0.47
TRIM28-212ENST00000597995 VWA5B1Q5TIE3 1220 aa12.13□□□□□ -0.47
TRIM28-212ENST00000597995 MAMDC2Q7Z304 686 aaPredicted RBP12.13□□□□□ -0.47
TRIM28-212ENST00000597995 SYCE1Q8N0S2 351 aa12.13□□□□□ -0.47
TRIM28-212ENST00000597995 UBL4BQ8N7F7 174 aa12.13□□□□□ -0.47
TRIM28-212ENST00000597995 FAM71DQ8N9W8 422 aa12.13□□□□□ -0.47
TRIM28-212ENST00000597995 OR4K2Q8NGD2 314 aa12.13□□□□□ -0.47
TRIM28-212ENST00000597995 OR13C4Q8NGS5 318 aa12.13□□□□□ -0.47
TRIM28-212ENST00000597995 SLC35B2Q8TB61 432 aa12.13□□□□□ -0.47
TRIM28-212ENST00000597995 PRR7Q8TB68 274 aa12.13□□□□□ -0.47
TRIM28-212ENST00000597995 NAT14Q8WUY8 206 aa12.13□□□□□ -0.47
TRIM28-212ENST00000597995 SGSM3Q96HU1 749 aa12.13□□□□□ -0.47
TRIM28-212ENST00000597995 TRAPPC9Q96Q05 1148 aa12.13□□□□□ -0.47
TRIM28-212ENST00000597995 FERD3LQ96RJ6 166 aa12.13□□□□□ -0.47
TRIM28-212ENST00000597995 SLC7A5P2Q9GIP4 190 aa12.13□□□□□ -0.47
TRIM28-212ENST00000597995 TFB2MQ9H5Q4 396 aaKnown RBP12.13□□□□□ -0.47
TRIM28-212ENST00000597995 ARNT2Q9HBZ2 717 aa12.13□□□□□ -0.47
TRIM28-212ENST00000597995 LUZP4Q9P127 313 aa12.13□□□□□ -0.47
TRIM28-212ENST00000597995 AAR2Q9Y312 384 aaKnown RBP12.13□□□□□ -0.47
TRIM28-212ENST00000597995 ITPR2Q14571 2701 aa12.13□□□□□ -0.47
TRIM28-212ENST00000597995 A1L4Q6 167 aa12.12□□□□□ -0.47
TRIM28-212ENST00000597995 GSAPA4D1B5 854 aa12.12□□□□□ -0.47
TRIM28-212ENST00000597995 ENO4A6NNW6 628 aa12.12□□□□□ -0.47
TRIM28-212ENST00000597995 C2orf74A8MZ97 194 aa12.12□□□□□ -0.47
TRIM28-212ENST00000597995 CFAP99D6REC4 459 aa12.12□□□□□ -0.47
TRIM28-212ENST00000597995 IFRD1O00458 451 aaPredicted RBP12.12□□□□□ -0.47
TRIM28-212ENST00000597995 BTN3A3O00478 584 aa12.12□□□□□ -0.47
TRIM28-212ENST00000597995 IGHEP01854 428 aa12.12□□□□□ -0.47
TRIM28-212ENST00000597995 CD63P08962 238 aa12.12□□□□□ -0.47
TRIM28-212ENST00000597995 ST6GAL1P15907 406 aa12.12□□□□□ -0.47
TRIM28-212ENST00000597995 CETN2P41208 172 aa12.12□□□□□ -0.47
TRIM28-212ENST00000597995 ATP1A4Q13733 1029 aa12.12□□□□□ -0.47
TRIM28-212ENST00000597995 SSPNQ14714 243 aa12.12□□□□□ -0.47
TRIM28-212ENST00000597995 PTCHD3Q3KNS1 767 aa12.12□□□□□ -0.47
TRIM28-212ENST00000597995 PLEKHN1Q494U1 663 aaPredicted RBP12.12□□□□□ -0.47
TRIM28-212ENST00000597995 FAM69BQ5VUD6 431 aa12.12□□□□□ -0.47
TRIM28-212ENST00000597995 ZNF385CQ66K41 422 aaPredicted RBP12.12□□□□□ -0.47
TRIM28-212ENST00000597995 IGFL3Q6UXB1 125 aa12.12□□□□□ -0.47
TRIM28-212ENST00000597995 IQCKQ8N0W5 287 aa12.12□□□□□ -0.47
TRIM28-212ENST00000597995 RNF10Q8N5U6 811 aaKnown RBP12.12□□□□□ -0.47
TRIM28-212ENST00000597995 LILRA3Q8N6C8 439 aaPredicted RBP12.12□□□□□ -0.47
TRIM28-212ENST00000597995 ATG4AQ8WYN0 398 aa12.12□□□□□ -0.47
TRIM28-212ENST00000597995 SNRNP40Q96DI7 357 aaKnown RBP12.12□□□□□ -0.47
TRIM28-212ENST00000597995 FER1L6-AS2Q96M78 137 aa12.12□□□□□ -0.47
TRIM28-212ENST00000597995 COPS8Q99627 209 aa12.12□□□□□ -0.47
TRIM28-212ENST00000597995 TMEM121Q9BTD3 319 aa12.12□□□□□ -0.47
TRIM28-212ENST00000597995 MVB12BQ9H7P6 319 aa12.12□□□□□ -0.47
TRIM28-212ENST00000597995 MAP10Q9P2G4 905 aa12.12□□□□□ -0.47
TRIM28-212ENST00000597995 FAM8A1Q9UBU6 413 aa12.12□□□□□ -0.47
TRIM28-212ENST00000597995 FKBPLQ9UIM3 349 aa12.12□□□□□ -0.47
TRIM28-212ENST00000597995 CRLS1Q9UJA2 301 aa12.12□□□□□ -0.47
TRIM28-212ENST00000597995 PIKFYVEQ9Y2I7 2098 aa12.12□□□□□ -0.47
TRIM28-212ENST00000597995 BTN3A1O00481 513 aa12.11□□□□□ -0.47
TRIM28-212ENST00000597995 ZNF749O43361 778 aa12.11□□□□□ -0.47
TRIM28-212ENST00000597995 LDB2O43679 373 aa12.11□□□□□ -0.47
TRIM28-212ENST00000597995 KLF7O75840 302 aaPredicted RBP12.11□□□□□ -0.47
TRIM28-212ENST00000597995 STK10O94804 968 aaKnown RBP12.11□□□□□ -0.47
TRIM28-212ENST00000597995 CBX6O95503 412 aa12.11□□□□□ -0.47
TRIM28-212ENST00000597995 CRTAMO95727 393 aa12.11□□□□□ -0.47
TRIM28-212ENST00000597995 LDLRP01130 860 aa12.11□□□□□ -0.47
TRIM28-212ENST00000597995 ATP1B2P14415 290 aaPredicted RBP12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms