RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 C8orf74Q6P047 294 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 FAM92BQ6ZTR7 304 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 ANKMY2Q8IV38 441 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 CNTN4Q8IWV2 1026 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 BMPERQ8N8U9 685 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 C2CD4AQ8NCU7 369 aaPredicted RBP14.15□□□□□ -0.14
VRK3-206ENST00000594090 FBXO36Q8NEA4 188 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 OR4E2Q8NGC2 313 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 GABPB2Q8TAK5 448 aaPredicted RBP14.15□□□□□ -0.14
VRK3-206ENST00000594090 LCN9Q8WX39 176 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 USP7Q93009 1102 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 FAM136AQ96C01 138 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 CD180Q99467 661 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 NRTNQ99748 197 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 TFB2MQ9H5Q4 396 aaKnown RBP14.15□□□□□ -0.14
VRK3-206ENST00000594090 HRASLS2Q9NWW9 162 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 GALPQ9UBC7 116 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 ICKQ9UPZ9 632 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 A0A087WV48 116 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 B4E171 279 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 C9orf172C9J069 976 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 NVLO15381 856 aaKnown RBP14.15□□□□□ -0.14
VRK3-206ENST00000594090 PRAMEF10O60809 474 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 POLR2CP19387 275 aaPredicted RBP14.15□□□□□ -0.14
VRK3-206ENST00000594090 CHRM3P20309 590 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 TSPAN7P41732 249 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 TUBB2AQ13885 445 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 DNTTIP2Q5QJE6 756 aaKnown RBP14.15□□□□□ -0.14
VRK3-206ENST00000594090 ARMC6Q6NXE6 501 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 ZNF549Q6P9A3 640 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 TRMT10BQ6PF06 316 aaKnown RBP14.15□□□□□ -0.14
VRK3-206ENST00000594090 CNSTQ6PJW8 725 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 UNC5DQ6UXZ4 953 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 AMIGO1Q86WK6 493 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 ZBTB2Q8N680 514 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 ZNF248Q8NDW4 579 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 GSDMBQ8TAX9 411 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 ART4Q93070 314 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 PMEPA1Q969W9 287 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 TAAR9Q96RI9 348 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 TUBB2BQ9BVA1 445 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 B3GNT4Q9C0J1 378 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 CCDC68Q9H2F9 335 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 LATS2Q9NRM7 1088 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 SIDT1Q9NXL6 827 aaKnown RBP14.15□□□□□ -0.14
VRK3-206ENST00000594090 FOXJ2Q9P0K8 574 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 SEMA5BQ9P283 1151 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 POLG2Q9UHN1 485 aa14.15□□□□□ -0.14
VRK3-206ENST00000594090 TDRKHQ9Y2W6 561 aaKnown RBP14.15□□□□□ -0.14
VRK3-206ENST00000594090 TLCD2A6NGC4 264 aa14.14□□□□□ -0.15
VRK3-206ENST00000594090 MATN2O00339 956 aa14.14□□□□□ -0.15
VRK3-206ENST00000594090 BTN3A1O00481 513 aa14.14□□□□□ -0.15
VRK3-206ENST00000594090 RRP8O43159 456 aaKnown RBP14.14□□□□□ -0.15
VRK3-206ENST00000594090 HAUS5O94927 633 aa14.14□□□□□ -0.15
VRK3-206ENST00000594090 RPN2P04844 631 aa14.14□□□□□ -0.15
VRK3-206ENST00000594090 ATP5DP30049 168 aa14.14□□□□□ -0.15
VRK3-206ENST00000594090 SHMT2P34897 504 aa14.14□□□□□ -0.15
VRK3-206ENST00000594090 SEPHS1P49903 392 aa14.14□□□□□ -0.15
VRK3-206ENST00000594090 CLCN7P51798 805 aa14.14□□□□□ -0.15
VRK3-206ENST00000594090 KPNA2P52292 529 aaKnown RBP14.14□□□□□ -0.15
VRK3-206ENST00000594090 RAB15P59190 212 aa14.14□□□□□ -0.15
VRK3-206ENST00000594090 SLC7A5Q01650 507 aa14.14□□□□□ -0.15
VRK3-206ENST00000594090 MC2RQ01718 297 aa14.14□□□□□ -0.15
VRK3-206ENST00000594090 ABRQ12979 859 aa14.14□□□□□ -0.15
VRK3-206ENST00000594090 PRKAA1Q13131 559 aa14.14□□□□□ -0.15
VRK3-206ENST00000594090 FRG1Q14331 258 aaKnown RBP14.14□□□□□ -0.15
VRK3-206ENST00000594090 TEDDM1Q5T9Z0 273 aa14.14□□□□□ -0.15
VRK3-206ENST00000594090 KIAA0408Q6ZU52 694 aa14.14□□□□□ -0.15
VRK3-206ENST00000594090 DCUN1D3Q8IWE4 304 aa14.14□□□□□ -0.15
VRK3-206ENST00000594090 ZBED8Q8IZ13 594 aa14.14□□□□□ -0.15
VRK3-206ENST00000594090 CFAP61Q8NHU2 1237 aa14.14□□□□□ -0.15
VRK3-206ENST00000594090 KIF18AQ8NI77 898 aa14.14□□□□□ -0.15
VRK3-206ENST00000594090 KLHL6Q8WZ60 621 aa14.14□□□□□ -0.15
VRK3-206ENST00000594090 UBXN4Q92575 508 aa14.14□□□□□ -0.15
VRK3-206ENST00000594090 KCNJ9Q92806 393 aa14.14□□□□□ -0.15
VRK3-206ENST00000594090 MAP3K3Q99759 626 aa14.14□□□□□ -0.15
VRK3-206ENST00000594090 DDA1Q9BW61 102 aa14.14□□□□□ -0.15
VRK3-206ENST00000594090 XKR8Q9H6D3 395 aa14.14□□□□□ -0.15
VRK3-206ENST00000594090 PPANQ9NQ55 473 aaKnown RBP14.14□□□□□ -0.15
VRK3-206ENST00000594090 SLC39A1Q9NY26 324 aa14.14□□□□□ -0.15
VRK3-206ENST00000594090 SLC17A6Q9P2U8 582 aa14.14□□□□□ -0.15
VRK3-206ENST00000594090 ACSL6Q9UKU0 697 aa14.14□□□□□ -0.15
VRK3-206ENST00000594090 POMT2Q9UKY4 750 aa14.14□□□□□ -0.15
VRK3-206ENST00000594090 PLAGL1Q9UM63 463 aa14.14□□□□□ -0.15
VRK3-206ENST00000594090 MED16Q9Y2X0 877 aa14.14□□□□□ -0.15
VRK3-206ENST00000594090 PCDHGA3Q9Y5H0 932 aa14.14□□□□□ -0.15
VRK3-206ENST00000594090 COMMD10Q9Y6G5 202 aa14.14□□□□□ -0.15
VRK3-206ENST00000594090 IGHV5-51A0A0C4DH38 117 aa14.13□□□□□ -0.15
VRK3-206ENST00000594090 GSAPA4D1B5 854 aa14.13□□□□□ -0.15
VRK3-206ENST00000594090 BTN3A3O00478 584 aa14.13□□□□□ -0.15
VRK3-206ENST00000594090 EIF3HO15372 352 aaKnown RBP eCLIP14.13□□□□□ -0.15
VRK3-206ENST00000594090 KDM1AO60341 852 aa14.13□□□□□ -0.15
VRK3-206ENST00000594090 TPBGLP0DKB5 382 aa14.13□□□□□ -0.15
VRK3-206ENST00000594090 CARSP49589 748 aaKnown RBP14.13□□□□□ -0.15
VRK3-206ENST00000594090 PLTPP55058 493 aa14.13□□□□□ -0.15
VRK3-206ENST00000594090 CAV1Q03135 178 aa14.13□□□□□ -0.15
VRK3-206ENST00000594090 TMEM164Q5U3C3 297 aa14.13□□□□□ -0.15
VRK3-206ENST00000594090 GALNT7Q86SF2 657 aa14.13□□□□□ -0.15
VRK3-206ENST00000594090 ADGRF3Q8IZF5 1079 aa14.13□□□□□ -0.15
VRK3-206ENST00000594090 MNS1Q8NEH6 495 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms