RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 FGF5P12034 268 aa23.2■■□□□ 1.3
SHMT1-206ENST00000579558 LIFP15018 202 aa23.2■■□□□ 1.3
SHMT1-206ENST00000579558 CDH3P22223 829 aa23.2■■□□□ 1.3
SHMT1-206ENST00000579558 HSD11B2P80365 405 aa23.2■■□□□ 1.3
SHMT1-206ENST00000579558 ACY1Q03154 408 aa23.2■■□□□ 1.3
SHMT1-206ENST00000579558 TMED2Q15363 201 aa23.2■■□□□ 1.3
SHMT1-206ENST00000579558 TAF1BQ53T94 588 aaPredicted RBP23.2■■□□□ 1.3
SHMT1-206ENST00000579558 FBXO38Q6PIJ6 1188 aa23.2■■□□□ 1.3
SHMT1-206ENST00000579558 LRRC6Q86X45 466 aa23.2■■□□□ 1.3
SHMT1-206ENST00000579558 NAT8LQ8N9F0 302 aa23.2■■□□□ 1.3
SHMT1-206ENST00000579558 ASZ1Q8WWH4 475 aa23.2■■□□□ 1.3
SHMT1-206ENST00000579558 CAPZA3Q96KX2 299 aa23.2■■□□□ 1.3
SHMT1-206ENST00000579558 PPM1MQ96MI6 270 aa23.2■■□□□ 1.3
SHMT1-206ENST00000579558 PANX3Q96QZ0 392 aa23.2■■□□□ 1.3
SHMT1-206ENST00000579558 NAPGQ99747 312 aaPredicted RBP23.2■■□□□ 1.3
SHMT1-206ENST00000579558 P2RY12Q9H244 342 aa23.2■■□□□ 1.3
SHMT1-206ENST00000579558 POLG2Q9UHN1 485 aa23.2■■□□□ 1.3
SHMT1-206ENST00000579558 RARRES3Q9UL19 164 aa23.2■■□□□ 1.3
SHMT1-206ENST00000579558 ICKQ9UPZ9 632 aa23.2■■□□□ 1.3
SHMT1-206ENST00000579558 TDRKHQ9Y2W6 561 aaKnown RBP23.2■■□□□ 1.3
SHMT1-206ENST00000579558 ZNF28P17035 718 aa23.19■■□□□ 1.3
SHMT1-206ENST00000579558 RPS3P23396 243 aaKnown RBP eCLIP23.19■■□□□ 1.3
SHMT1-206ENST00000579558 EIF3BP55884 814 aaKnown RBP23.19■■□□□ 1.3
SHMT1-206ENST00000579558 LARP7Q4G0J3 582 aaKnown RBP eCLIP23.19■■□□□ 1.3
SHMT1-206ENST00000579558 PAPD7Q5XG87 772 aaKnown RBP23.19■■□□□ 1.3
SHMT1-206ENST00000579558 VRK3Q8IV63 474 aa23.19■■□□□ 1.3
SHMT1-206ENST00000579558 PPIL6Q8IXY8 311 aa23.19■■□□□ 1.3
SHMT1-206ENST00000579558 SLC22A15Q8IZD6 547 aa23.19■■□□□ 1.3
SHMT1-206ENST00000579558 D2HGDHQ8N465 521 aa23.19■■□□□ 1.3
SHMT1-206ENST00000579558 ESX1Q8N693 406 aa23.19■■□□□ 1.3
SHMT1-206ENST00000579558 OR5K2Q8NHB8 316 aa23.19■■□□□ 1.3
SHMT1-206ENST00000579558 SLC39A7Q92504 469 aa23.19■■□□□ 1.3
SHMT1-206ENST00000579558 TTC9Q92623 222 aa23.19■■□□□ 1.3
SHMT1-206ENST00000579558 KIAA1143Q96AT1 154 aaPredicted RBP23.19■■□□□ 1.3
SHMT1-206ENST00000579558 ZNF669Q96BR6 464 aaPredicted RBP23.19■■□□□ 1.3
SHMT1-206ENST00000579558 TRIM56Q9BRZ2 755 aaKnown RBP23.19■■□□□ 1.3
SHMT1-206ENST00000579558 C1GALT1Q9NS00 363 aa23.19■■□□□ 1.3
SHMT1-206ENST00000579558 SOHLH2Q9NX45 425 aa23.19■■□□□ 1.3
SHMT1-206ENST00000579558 ASIC3Q9UHC3 531 aa23.19■■□□□ 1.3
SHMT1-206ENST00000579558 CDYLQ9Y232 598 aa23.19■■□□□ 1.3
SHMT1-206ENST00000579558 FAM237BA0A1B0GVD1 139 aa23.18■■□□□ 1.3
SHMT1-206ENST00000579558 MAGEB16A2A368 324 aa23.18■■□□□ 1.3
SHMT1-206ENST00000579558 C2orf74A8MZ97 194 aa23.18■■□□□ 1.3
SHMT1-206ENST00000579558 PFDN6O15212 129 aa23.18■■□□□ 1.3
SHMT1-206ENST00000579558 GPC4O75487 556 aa23.18■■□□□ 1.3
SHMT1-206ENST00000579558 SPAG6O75602 509 aa23.18■■□□□ 1.3
SHMT1-206ENST00000579558 KIAA0754O94854 1291 aa23.18■■□□□ 1.3
SHMT1-206ENST00000579558 AOAHP28039 575 aa23.18■■□□□ 1.3
SHMT1-206ENST00000579558 PRDX3P30048 256 aaKnown RBP23.18■■□□□ 1.3
SHMT1-206ENST00000579558 SHMT2P34897 504 aa23.18■■□□□ 1.3
SHMT1-206ENST00000579558 ABHD18Q0P651 414 aa23.18■■□□□ 1.3
SHMT1-206ENST00000579558 DHX34Q14147 1143 aaKnown RBP23.18■■□□□ 1.3
SHMT1-206ENST00000579558 MAP7Q14244 749 aa23.18■■□□□ 1.3
SHMT1-206ENST00000579558 TYSND1Q2T9J0 566 aa23.18■■□□□ 1.3
SHMT1-206ENST00000579558 ANKRD20A4Q4UJ75 823 aa23.18■■□□□ 1.3
SHMT1-206ENST00000579558 DNAJC21Q5F1R6 531 aaKnown RBP23.18■■□□□ 1.3
SHMT1-206ENST00000579558 TMTC4Q5T4D3 741 aa23.18■■□□□ 1.3
SHMT1-206ENST00000579558 RNF187Q5TA31 235 aaPredicted RBP23.18■■□□□ 1.3
SHMT1-206ENST00000579558 PCSK4Q6UW60 755 aa23.18■■□□□ 1.3
SHMT1-206ENST00000579558 ADGRF3Q8IZF5 1079 aa23.18■■□□□ 1.3
SHMT1-206ENST00000579558 LSM14AQ8ND56 463 aaKnown RBP23.18■■□□□ 1.3
SHMT1-206ENST00000579558 GPN2Q9H9Y4 310 aaPredicted RBP23.18■■□□□ 1.3
SHMT1-206ENST00000579558 FGF21Q9NSA1 209 aa23.18■■□□□ 1.3
SHMT1-206ENST00000579558 LNPEPQ9UIQ6 1025 aa23.18■■□□□ 1.3
SHMT1-206ENST00000579558 LOC101059948A0A1B0GTJ6 334 aa23.17■■□□□ 1.3
SHMT1-206ENST00000579558 SLC9B1P1A6NJY1 282 aa23.17■■□□□ 1.3
SHMT1-206ENST00000579558 OGNP20774 298 aaKnown RBP23.17■■□□□ 1.3
SHMT1-206ENST00000579558 RNASEH2BQ5TBB1 312 aaKnown RBP23.17■■□□□ 1.3
SHMT1-206ENST00000579558 C6orf15Q6UXA7 325 aaPredicted RBP23.17■■□□□ 1.3
SHMT1-206ENST00000579558 UNC5BQ8IZJ1 945 aa23.17■■□□□ 1.3
SHMT1-206ENST00000579558 GALNT6Q8NCL4 622 aa23.17■■□□□ 1.3
SHMT1-206ENST00000579558 STAMBPL1Q96FJ0 436 aa23.17■■□□□ 1.3
SHMT1-206ENST00000579558 TCF12Q99081 682 aa23.17■■□□□ 1.3
SHMT1-206ENST00000579558 ACTR10Q9NZ32 417 aa23.17■■□□□ 1.3
SHMT1-206ENST00000579558 IL1RAPL1Q9NZN1 696 aa23.17■■□□□ 1.3
SHMT1-206ENST00000579558 PCYOX1Q9UHG3 505 aa23.17■■□□□ 1.3
SHMT1-206ENST00000579558 BTRCQ9Y297 605 aa23.17■■□□□ 1.3
SHMT1-206ENST00000579558 SAR1BQ9Y6B6 198 aa23.17■■□□□ 1.3
SHMT1-206ENST00000579558 MAD1L1Q9Y6D9 718 aa23.17■■□□□ 1.3
SHMT1-206ENST00000579558 RPS6KL1Q9Y6S9 549 aa23.17■■□□□ 1.3
SHMT1-206ENST00000579558 CTAGE9A4FU28 777 aa23.16■■□□□ 1.3
SHMT1-206ENST00000579558 TK2O00142 265 aa23.16■■□□□ 1.3
SHMT1-206ENST00000579558 KDM1AO60341 852 aa23.16■■□□□ 1.3
SHMT1-206ENST00000579558 SLCO2B1O94956 709 aa23.16■■□□□ 1.3
SHMT1-206ENST00000579558 FMO4P31512 558 aa23.16■■□□□ 1.3
SHMT1-206ENST00000579558 MAGEA3P43357 314 aa23.16■■□□□ 1.3
SHMT1-206ENST00000579558 TUBB4BP68371 445 aa23.16■■□□□ 1.3
SHMT1-206ENST00000579558 ABRQ12979 859 aa23.16■■□□□ 1.3
SHMT1-206ENST00000579558 PTK6Q13882 451 aa23.16■■□□□ 1.3
SHMT1-206ENST00000579558 TUBB2AQ13885 445 aa23.16■■□□□ 1.3
SHMT1-206ENST00000579558 GPR19Q15760 415 aa23.16■■□□□ 1.3
SHMT1-206ENST00000579558 CTSL3PQ5NE16 218 aa23.16■■□□□ 1.3
SHMT1-206ENST00000579558 NEPROQ6NW34 567 aa23.16■■□□□ 1.3
SHMT1-206ENST00000579558 UNC5AQ6ZN44 842 aa23.16■■□□□ 1.3
SHMT1-206ENST00000579558 BPHLQ86WA6 291 aaPredicted RBP23.16■■□□□ 1.3
SHMT1-206ENST00000579558 CFAP61Q8NHU2 1237 aa23.16■■□□□ 1.3
SHMT1-206ENST00000579558 GSDMBQ8TAX9 411 aa23.16■■□□□ 1.3
SHMT1-206ENST00000579558 LPGAT1Q92604 370 aa23.16■■□□□ 1.3
SHMT1-206ENST00000579558 SLCO2A1Q92959 643 aa23.16■■□□□ 1.3
SHMT1-206ENST00000579558 WBP1Q96G27 269 aa23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms