RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 PYCR3Q53H96 274 aa9.42□□□□□ -0.9
CCDC40-212ENST00000574799 OR8H1Q8NGG4 311 aa9.42□□□□□ -0.9
CCDC40-212ENST00000574799 ISL2Q96A47 359 aa9.42□□□□□ -0.9
CCDC40-212ENST00000574799 TMCO6Q96DC7 493 aa9.42□□□□□ -0.9
CCDC40-212ENST00000574799 FAM120BQ96EK7 910 aaKnown RBP9.42□□□□□ -0.9
CCDC40-212ENST00000574799 CCDC120Q96HB5 630 aa9.42□□□□□ -0.9
CCDC40-212ENST00000574799 AGO3Q9H9G7 860 aaKnown RBP9.42□□□□□ -0.9
CCDC40-212ENST00000574799 POLR3BQ9NW08 1133 aaPredicted RBP9.42□□□□□ -0.9
CCDC40-212ENST00000574799 UBA2Q9UBT2 640 aaPredicted RBP9.42□□□□□ -0.9
CCDC40-212ENST00000574799 MICAL3Q7RTP6 2002 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 ARNTP27540 789 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 SELPLGQ14242 412 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 STARD3Q14849 445 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 NFE2Q16621 373 aaPredicted RBP9.41□□□□□ -0.9
CCDC40-212ENST00000574799 TIGD6Q17RP2 521 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 SGO1Q5FBB7 561 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 TECRLQ5HYJ1 363 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 PDZK1Q5T2W1 519 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 HECTD2Q5U5R9 776 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 NOTUMQ6P988 496 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 ENPP6Q6UWR7 440 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 BEND5Q7L4P6 421 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 GPRIN1Q7Z2K8 1008 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 NRARPQ7Z6K4 114 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 MILR1Q7Z6M3 343 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 ZDHHC17Q8IUH5 632 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 LACC1Q8IV20 430 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 DTWD1Q8N5C7 304 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 CDYL2Q8N8U2 506 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 DYNC2LI1Q8TCX1 351 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 PHF21AQ96BD5 680 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 Q96MT0 163 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 ALOXE3Q9BYJ1 711 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 POLG2Q9UHN1 485 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 RNF6Q9Y252 685 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 SHROOM3Q8TF72 1996 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 HHLA1C9JL84 531 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 F8W810 466 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 I3L521 148 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 HAT1O14929 419 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 NCAM2O15394 837 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 NOS2P35228 1153 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 CCT3P49368 545 aaKnown RBP9.41□□□□□ -0.9
CCDC40-212ENST00000574799 DGKQP52824 942 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 CHRNEQ04844 493 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 FOXM1Q08050 763 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 SMN1Q16637 294 aaKnown RBP9.41□□□□□ -0.9
CCDC40-212ENST00000574799 SLX4IPQ5VYV7 408 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 PNCKQ6P2M8 343 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 TXNDC11Q6PKC3 985 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 BLOC1S3Q6QNY0 202 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 RBM23Q86U06 439 aaKnown RBP9.41□□□□□ -0.9
CCDC40-212ENST00000574799 HID1Q8IV36 788 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 SVOPLQ8N434 492 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 FAM109AQ8N4B1 249 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 SLC2A14Q8TDB8 520 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 UTP15Q8TED0 518 aaKnown RBP9.41□□□□□ -0.9
CCDC40-212ENST00000574799 ESAMQ96AP7 390 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 MAP6Q96JE9 813 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 NSUN5Q96P11 429 aaKnown RBP9.41□□□□□ -0.9
CCDC40-212ENST00000574799 PKMYT1Q99640 499 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 COPS4Q9BT78 406 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 ITPAQ9BY32 194 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 HSPB11Q9Y547 144 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 FXYD1O00168 92 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 BTN3A3O00478 584 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 CLDN5O00501 218 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 CCNYL3P0C7X3 344 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 IL7P13232 177 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 AKT1P31749 480 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 ATP4BP51164 291 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 CRYBB1P53674 252 aaPredicted RBP9.41□□□□□ -0.9
CCDC40-212ENST00000574799 MAPK12P53778 367 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 FOXA1P55317 472 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 SH3BP2P78314 561 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 ACAP2Q15057 778 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 KYAT1Q16773 422 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 KLHL17Q6TDP4 642 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 DPY19L3Q6ZPD9 716 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 ZNF438Q7Z4V0 828 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 PIM3Q86V86 326 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 ZMIZ2Q8NF64 920 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 PMEPA1Q969W9 287 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 NECTIN4Q96NY8 510 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 ACOX2Q99424 681 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 MLPHQ9BV36 600 aaPredicted RBP9.41□□□□□ -0.9
CCDC40-212ENST00000574799 TNKS2Q9H2K2 1166 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 SLA2Q9H6Q3 261 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 RANGRFQ9HD47 186 aaPredicted RBP9.41□□□□□ -0.9
CCDC40-212ENST00000574799 DNMT3BQ9UBC3 853 aaKnown RBP9.41□□□□□ -0.9
CCDC40-212ENST00000574799 ABCD2Q9UBJ2 740 aa9.41□□□□□ -0.9
CCDC40-212ENST00000574799 CDK14O94921 469 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 GOT2P00505 430 aaKnown RBP9.4□□□□□ -0.9
CCDC40-212ENST00000574799 RPLP0P05388 317 aaKnown RBP9.4□□□□□ -0.9
CCDC40-212ENST00000574799 GADD45AP24522 165 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 MATKP42679 507 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 CHRNA4P43681 627 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 OR3A3P47888 321 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 NDUFV1P49821 464 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 CLCN5P51795 746 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms