RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 SMAD5Q99717 465 aaKnown RBP20.41■□□□□ 0.86
VPS53-216ENST00000574029 VPS37BQ9H9H4 285 aa20.41■□□□□ 0.86
VPS53-216ENST00000574029 CUEDC1Q9NWM3 386 aaPredicted RBP20.41■□□□□ 0.86
VPS53-216ENST00000574029 GPR83Q9NYM4 423 aa20.41■□□□□ 0.86
VPS53-216ENST00000574029 PCDHA3Q9Y5H8 950 aa20.41■□□□□ 0.86
VPS53-216ENST00000574029 H7C0S8 307 aa20.4■□□□□ 0.86
VPS53-216ENST00000574029 ATP1A4Q13733 1029 aa20.4■□□□□ 0.86
VPS53-216ENST00000574029 SPARCL1Q14515 664 aa20.4■□□□□ 0.86
VPS53-216ENST00000574029 SLC6A19Q695T7 634 aa20.4■□□□□ 0.86
VPS53-216ENST00000574029 HIST2H2BCQ6DN03 193 aa20.4■□□□□ 0.86
VPS53-216ENST00000574029 ZNF449Q6P9G9 518 aa20.4■□□□□ 0.86
VPS53-216ENST00000574029 DARS2Q6PI48 645 aaKnown RBP20.4■□□□□ 0.86
VPS53-216ENST00000574029 SERPINA9Q86WD7 417 aa20.4■□□□□ 0.86
VPS53-216ENST00000574029 TC2NQ8N9U0 490 aa20.4■□□□□ 0.86
VPS53-216ENST00000574029 TFGQ92734 400 aaPredicted RBP20.4■□□□□ 0.86
VPS53-216ENST00000574029 PNPLA2Q96AD5 504 aa20.4■□□□□ 0.86
VPS53-216ENST00000574029 DHRS4Q9BTZ2 278 aa20.4■□□□□ 0.86
VPS53-216ENST00000574029 MFRPQ9BY79 579 aa20.4■□□□□ 0.86
VPS53-216ENST00000574029 OSBPL8Q9BZF1 889 aa20.4■□□□□ 0.86
VPS53-216ENST00000574029 TRIM5Q9C035 493 aa20.4■□□□□ 0.86
VPS53-216ENST00000574029 SLC7A5P2Q9GIP4 190 aa20.4■□□□□ 0.86
VPS53-216ENST00000574029 KLHL25Q9H0H3 589 aa20.4■□□□□ 0.86
VPS53-216ENST00000574029 XKR8Q9H6D3 395 aa20.4■□□□□ 0.86
VPS53-216ENST00000574029 SLAMF7Q9NQ25 335 aa20.4■□□□□ 0.86
VPS53-216ENST00000574029 ACTR10Q9NZ32 417 aa20.4■□□□□ 0.86
VPS53-216ENST00000574029 LUZP4Q9P127 313 aa20.4■□□□□ 0.86
VPS53-216ENST00000574029 UNC79Q9P2D8 2635 aa20.4■□□□□ 0.86
VPS53-216ENST00000574029 UTP20O75691 2785 aaKnown RBP20.39■□□□□ 0.85
VPS53-216ENST00000574029 MACROD2A1Z1Q3 448 aa20.39■□□□□ 0.85
VPS53-216ENST00000574029 A6NL46 340 aa20.39■□□□□ 0.85
VPS53-216ENST00000574029 TCP11X1B4DZS4 312 aa20.39■□□□□ 0.85
VPS53-216ENST00000574029 C9J4A7 227 aa20.39■□□□□ 0.85
VPS53-216ENST00000574029 KLF7O75840 302 aaPredicted RBP20.39■□□□□ 0.85
VPS53-216ENST00000574029 GSTM1P09488 218 aa20.39■□□□□ 0.85
VPS53-216ENST00000574029 AGXTP21549 392 aa20.39■□□□□ 0.85
VPS53-216ENST00000574029 CTNNA2P26232 953 aa20.39■□□□□ 0.85
VPS53-216ENST00000574029 GSTM4Q03013 218 aa20.39■□□□□ 0.85
VPS53-216ENST00000574029 ZRANB3Q5FWF4 1079 aa20.39■□□□□ 0.85
VPS53-216ENST00000574029 SPESP1Q6UW49 350 aa20.39■□□□□ 0.85
VPS53-216ENST00000574029 MICALCLQ6ZW33 695 aa20.39■□□□□ 0.85
VPS53-216ENST00000574029 RAB43Q86YS6 212 aa20.39■□□□□ 0.85
VPS53-216ENST00000574029 DNAJC1Q96KC8 554 aaKnown RBP20.39■□□□□ 0.85
VPS53-216ENST00000574029 FAM118BQ9BPY3 351 aa20.39■□□□□ 0.85
VPS53-216ENST00000574029 HGH1Q9BTY7 390 aa20.39■□□□□ 0.85
VPS53-216ENST00000574029 NLE1Q9NVX2 485 aaPredicted RBP20.39■□□□□ 0.85
VPS53-216ENST00000574029 ICKQ9UPZ9 632 aa20.39■□□□□ 0.85
VPS53-216ENST00000574029 PADI2Q9Y2J8 665 aa20.39■□□□□ 0.85
VPS53-216ENST00000574029 ICE1Q9Y2F5 2266 aa20.38■□□□□ 0.85
VPS53-216ENST00000574029 H3BMH7 237 aa20.38■□□□□ 0.85
VPS53-216ENST00000574029 PRSS56P0CW18 603 aa20.38■□□□□ 0.85
VPS53-216ENST00000574029 RNF224P0DH78 156 aa20.38■□□□□ 0.85
VPS53-216ENST00000574029 VARSP26640 1264 aaKnown RBP20.38■□□□□ 0.85
VPS53-216ENST00000574029 PRKG2Q13237 762 aa20.38■□□□□ 0.85
VPS53-216ENST00000574029 KCTD11Q693B1 232 aa20.38■□□□□ 0.85
VPS53-216ENST00000574029 CCDC170Q8IYT3 715 aa20.38■□□□□ 0.85
VPS53-216ENST00000574029 CLDN19Q8N6F1 224 aa20.38■□□□□ 0.85
VPS53-216ENST00000574029 C19orf47Q8N9M1 422 aaKnown RBP20.38■□□□□ 0.85
VPS53-216ENST00000574029 SGSM3Q96HU1 749 aa20.38■□□□□ 0.85
VPS53-216ENST00000574029 FAM60AQ9NP50 221 aa20.38■□□□□ 0.85
VPS53-216ENST00000574029 C5AR2Q9P296 337 aa20.38■□□□□ 0.85
VPS53-216ENST00000574029 FER1L5A0AVI2 2057 aa20.38■□□□□ 0.85
VPS53-216ENST00000574029 PIKFYVEQ9Y2I7 2098 aa20.38■□□□□ 0.85
VPS53-216ENST00000574029 AP2A2O94973 939 aa20.37■□□□□ 0.85
VPS53-216ENST00000574029 GABRA4P48169 554 aa20.37■□□□□ 0.85
VPS53-216ENST00000574029 SPA17Q15506 151 aa20.37■□□□□ 0.85
VPS53-216ENST00000574029 TAS2R42Q7RTR8 314 aa20.37■□□□□ 0.85
VPS53-216ENST00000574029 GPR135Q8IZ08 494 aa20.37■□□□□ 0.85
VPS53-216ENST00000574029 TBRG4Q969Z0 631 aaKnown RBP eCLIP20.37■□□□□ 0.85
VPS53-216ENST00000574029 LRRC45Q96CN5 670 aa20.37■□□□□ 0.85
VPS53-216ENST00000574029 TCTN2Q96GX1 697 aa20.37■□□□□ 0.85
VPS53-216ENST00000574029 CDKN2AIPNLQ96HQ2 116 aa20.37■□□□□ 0.85
VPS53-216ENST00000574029 CALR3Q96L12 384 aaKnown RBP20.37■□□□□ 0.85
VPS53-216ENST00000574029 IP6K3Q96PC2 410 aa20.37■□□□□ 0.85
VPS53-216ENST00000574029 C17orf62Q9BQA9 187 aa20.37■□□□□ 0.85
VPS53-216ENST00000574029 SLC29A3Q9BZD2 475 aa20.37■□□□□ 0.85
VPS53-216ENST00000574029 CHRNA10Q9GZZ6 450 aa20.37■□□□□ 0.85
VPS53-216ENST00000574029 AP1M2Q9Y6Q5 423 aa20.37■□□□□ 0.85
VPS53-216ENST00000574029 ZNF189O75820 626 aaPredicted RBP20.36■□□□□ 0.85
VPS53-216ENST00000574029 CBSLP0DN79 551 aa20.36■□□□□ 0.85
VPS53-216ENST00000574029 UGT2B7P16662 529 aa20.36■□□□□ 0.85
VPS53-216ENST00000574029 OTX2P32243 289 aa20.36■□□□□ 0.85
VPS53-216ENST00000574029 SHMT2P34897 504 aa20.36■□□□□ 0.85
VPS53-216ENST00000574029 CBSP35520 551 aa20.36■□□□□ 0.85
VPS53-216ENST00000574029 CACNG1Q06432 222 aa20.36■□□□□ 0.85
VPS53-216ENST00000574029 MRPL49Q13405 166 aaKnown RBP20.36■□□□□ 0.85
VPS53-216ENST00000574029 SSPNQ14714 243 aa20.36■□□□□ 0.85
VPS53-216ENST00000574029 ZIC1Q15915 447 aa20.36■□□□□ 0.85
VPS53-216ENST00000574029 DBN1Q16643 649 aa20.36■□□□□ 0.85
VPS53-216ENST00000574029 EIF2S3LQ2VIR3 472 aaKnown RBP20.36■□□□□ 0.85
VPS53-216ENST00000574029 VWA5B1Q5TIE3 1220 aa20.36■□□□□ 0.85
VPS53-216ENST00000574029 RHBDD2Q6NTF9 364 aa20.36■□□□□ 0.85
VPS53-216ENST00000574029 UNC5AQ6ZN44 842 aa20.36■□□□□ 0.85
VPS53-216ENST00000574029 MRGPREQ86SM8 312 aa20.36■□□□□ 0.85
VPS53-216ENST00000574029 PIANPQ8IYJ0 282 aa20.36■□□□□ 0.85
VPS53-216ENST00000574029 OR5AR1Q8NGP9 310 aa20.36■□□□□ 0.85
VPS53-216ENST00000574029 FLVCR1-AS1Q8TAF5 88 aa20.36■□□□□ 0.85
VPS53-216ENST00000574029 MRFAP1L1Q96HT8 127 aa20.36■□□□□ 0.85
VPS53-216ENST00000574029 OR2A14Q96R47 310 aa20.36■□□□□ 0.85
VPS53-216ENST00000574029 LUC7LQ9NQ29 371 aaKnown RBP20.36■□□□□ 0.85
VPS53-216ENST00000574029 ESPL1Q14674 2120 aa20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms