RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 ZBTB2Q8N680 514 aa20.1■□□□□ 0.81
VPS53-210ENST00000571456 MVB12BQ9H7P6 319 aa20.1■□□□□ 0.81
VPS53-210ENST00000571456 LRIT1Q9P2V4 623 aa20.1■□□□□ 0.81
VPS53-210ENST00000571456 FLNCQ14315 2725 aa20.1■□□□□ 0.81
VPS53-210ENST00000571456 RP1P56715 2156 aa20.1■□□□□ 0.81
VPS53-210ENST00000571456 MTHFD1P11586 935 aaKnown RBP20.09■□□□□ 0.81
VPS53-210ENST00000571456 GABRB3P28472 473 aa20.09■□□□□ 0.81
VPS53-210ENST00000571456 SPRP35270 261 aaPredicted RBP20.09■□□□□ 0.81
VPS53-210ENST00000571456 CSRP3P50461 194 aa20.09■□□□□ 0.81
VPS53-210ENST00000571456 HSPA14Q0VDF9 509 aa20.09■□□□□ 0.81
VPS53-210ENST00000571456 SEPT7Q16181 437 aaKnown RBP20.09■□□□□ 0.81
VPS53-210ENST00000571456 RPE65Q16518 533 aa20.09■□□□□ 0.81
VPS53-210ENST00000571456 TBC1D25Q3MII6 688 aa20.09■□□□□ 0.81
VPS53-210ENST00000571456 KBTBD12Q3ZCT8 623 aa20.09■□□□□ 0.81
VPS53-210ENST00000571456 EFL1Q7Z2Z2 1120 aaKnown RBP20.09■□□□□ 0.81
VPS53-210ENST00000571456 ZC3HC1Q86WB0 502 aaKnown RBP20.09■□□□□ 0.81
VPS53-210ENST00000571456 CTAGE3PQ8IX95 158 aa20.09■□□□□ 0.81
VPS53-210ENST00000571456 IFI44Q8TCB0 444 aa20.09■□□□□ 0.81
VPS53-210ENST00000571456 INPP5DQ92835 1189 aa20.09■□□□□ 0.81
VPS53-210ENST00000571456 VPS39Q96JC1 886 aa20.09■□□□□ 0.81
VPS53-210ENST00000571456 DPYSL5Q9BPU6 564 aa20.09■□□□□ 0.81
VPS53-210ENST00000571456 WWP1Q9H0M0 922 aa20.09■□□□□ 0.81
VPS53-210ENST00000571456 VWA7Q9Y334 891 aa20.09■□□□□ 0.81
VPS53-210ENST00000571456 DHRS7Q9Y394 339 aa20.09■□□□□ 0.81
VPS53-210ENST00000571456 BOD1L1Q8NFC6 3051 aa20.08■□□□□ 0.81
VPS53-210ENST00000571456 SPTAN1Q13813 2472 aaKnown RBP20.08■□□□□ 0.81
VPS53-210ENST00000571456 CPED1A4D0V7 1026 aa20.08■□□□□ 0.81
VPS53-210ENST00000571456 LILRA5A6NI73 299 aa20.08■□□□□ 0.81
VPS53-210ENST00000571456 NIPSNAP2O75323 286 aa20.08■□□□□ 0.81
VPS53-210ENST00000571456 EML2O95834 649 aa20.08■□□□□ 0.81
VPS53-210ENST00000571456 C1QAP02745 245 aa20.08■□□□□ 0.81
VPS53-210ENST00000571456 CLCN7P51798 805 aa20.08■□□□□ 0.81
VPS53-210ENST00000571456 TMPRSS3P57727 454 aa20.08■□□□□ 0.81
VPS53-210ENST00000571456 GPLD1P80108 840 aa20.08■□□□□ 0.81
VPS53-210ENST00000571456 DNAJC3Q13217 504 aa20.08■□□□□ 0.81
VPS53-210ENST00000571456 GBX1Q14549 363 aa20.08■□□□□ 0.81
VPS53-210ENST00000571456 CLCA4Q14CN2 919 aa20.08■□□□□ 0.81
VPS53-210ENST00000571456 GUSBP11Q6P575 273 aa20.08■□□□□ 0.81
VPS53-210ENST00000571456 ZNF549Q6P9A3 640 aa20.08■□□□□ 0.81
VPS53-210ENST00000571456 EMBQ6PCB8 327 aa20.08■□□□□ 0.81
VPS53-210ENST00000571456 XKR5Q6UX68 686 aa20.08■□□□□ 0.81
VPS53-210ENST00000571456 UNC5DQ6UXZ4 953 aa20.08■□□□□ 0.81
VPS53-210ENST00000571456 KRT222Q8N1A0 295 aa20.08■□□□□ 0.81
VPS53-210ENST00000571456 C12orf66Q96MD2 445 aa20.08■□□□□ 0.81
VPS53-210ENST00000571456 FOPNLQ96NB1 174 aa20.08■□□□□ 0.81
VPS53-210ENST00000571456 RBBP8Q99708 897 aa20.08■□□□□ 0.81
VPS53-210ENST00000571456 MCMBPQ9BTE3 642 aa20.08■□□□□ 0.81
VPS53-210ENST00000571456 TXLNGYQ9BZA5 131 aa20.08■□□□□ 0.81
VPS53-210ENST00000571456 POPDC3Q9HBV1 291 aa20.08■□□□□ 0.81
VPS53-210ENST00000571456 SLC40A1Q9NP59 571 aa20.08■□□□□ 0.81
VPS53-210ENST00000571456 ZNF624Q9P2J8 865 aaPredicted RBP20.08■□□□□ 0.81
VPS53-210ENST00000571456 FAM8A1Q9UBU6 413 aa20.08■□□□□ 0.81
VPS53-210ENST00000571456 RABGEF1Q9UJ41 708 aa20.08■□□□□ 0.81
VPS53-210ENST00000571456 TRMT6Q9UJA5 497 aaKnown RBP20.08■□□□□ 0.81
VPS53-210ENST00000571456 WDR37Q9Y2I8 494 aa20.08■□□□□ 0.81
VPS53-210ENST00000571456 IQCF5A8MTL0 148 aa20.07■□□□□ 0.8
VPS53-210ENST00000571456 TCEA3O75764 348 aa20.07■□□□□ 0.8
VPS53-210ENST00000571456 ACSL3O95573 720 aa20.07■□□□□ 0.8
VPS53-210ENST00000571456 NTRK1P04629 796 aa20.07■□□□□ 0.8
VPS53-210ENST00000571456 SLC19A1P41440 591 aa20.07■□□□□ 0.8
VPS53-210ENST00000571456 RGS4P49798 205 aa20.07■□□□□ 0.8
VPS53-210ENST00000571456 UCNP55089 124 aa20.07■□□□□ 0.8
VPS53-210ENST00000571456 MAZP56270 477 aaKnown RBP20.07■□□□□ 0.8
VPS53-210ENST00000571456 POU4F1Q01851 419 aa20.07■□□□□ 0.8
VPS53-210ENST00000571456 ERCC6LQ2NKX8 1250 aa20.07■□□□□ 0.8
VPS53-210ENST00000571456 ARHGAP40Q5TG30 622 aa20.07■□□□□ 0.8
VPS53-210ENST00000571456 BROXQ5VW32 411 aa20.07■□□□□ 0.8
VPS53-210ENST00000571456 TAOK1Q7L7X3 1001 aa20.07■□□□□ 0.8
VPS53-210ENST00000571456 CACTIN-AS1Q8N1I8 211 aa20.07■□□□□ 0.8
VPS53-210ENST00000571456 PPM1NQ8N819 430 aa20.07■□□□□ 0.8
VPS53-210ENST00000571456 LKAAEAR1Q8TD35 194 aa20.07■□□□□ 0.8
VPS53-210ENST00000571456 MAGEC3Q8TD91 643 aa20.07■□□□□ 0.8
VPS53-210ENST00000571456 NAT14Q8WUY8 206 aa20.07■□□□□ 0.8
VPS53-210ENST00000571456 TFGQ92734 400 aaPredicted RBP20.07■□□□□ 0.8
VPS53-210ENST00000571456 CCDC74AQ96AQ1 378 aa20.07■□□□□ 0.8
VPS53-210ENST00000571456 TSPAN17Q96FV3 270 aa20.07■□□□□ 0.8
VPS53-210ENST00000571456 RMDN2Q96LZ7 410 aa20.07■□□□□ 0.8
VPS53-210ENST00000571456 INSM2Q96T92 566 aaPredicted RBP20.07■□□□□ 0.8
VPS53-210ENST00000571456 SLC38A3Q99624 504 aa20.07■□□□□ 0.8
VPS53-210ENST00000571456 PPCSQ9HAB8 311 aa20.07■□□□□ 0.8
VPS53-210ENST00000571456 SMYD2Q9NRG4 433 aa20.07■□□□□ 0.8
VPS53-210ENST00000571456 SCHIP1Q9P0W5 487 aaPredicted RBP20.07■□□□□ 0.8
VPS53-210ENST00000571456 FETUBQ9UGM5 382 aa20.07■□□□□ 0.8
VPS53-210ENST00000571456 POLG2Q9UHN1 485 aa20.07■□□□□ 0.8
VPS53-210ENST00000571456 PSMD13Q9UNM6 376 aa20.07■□□□□ 0.8
VPS53-210ENST00000571456 CDYLQ9Y232 598 aa20.07■□□□□ 0.8
VPS53-210ENST00000571456 IKBKGQ9Y6K9 419 aa20.07■□□□□ 0.8
VPS53-210ENST00000571456 RNF215Q9Y6U7 377 aa20.07■□□□□ 0.8
VPS53-210ENST00000571456 UNC13CQ8NB66 2214 aa20.07■□□□□ 0.8
VPS53-210ENST00000571456 MYO9AB2RTY4 2548 aa20.07■□□□□ 0.8
VPS53-210ENST00000571456 ITGB6P18564 788 aa20.06■□□□□ 0.8
VPS53-210ENST00000571456 FDXRP22570 491 aa20.06■□□□□ 0.8
VPS53-210ENST00000571456 ACADLP28330 430 aa20.06■□□□□ 0.8
VPS53-210ENST00000571456 PREPP48147 710 aa20.06■□□□□ 0.8
VPS53-210ENST00000571456 LIMK2P53671 638 aa20.06■□□□□ 0.8
VPS53-210ENST00000571456 VSNL1P62760 191 aa20.06■□□□□ 0.8
VPS53-210ENST00000571456 SQSTM1Q13501 440 aa20.06■□□□□ 0.8
VPS53-210ENST00000571456 KRT33BQ14525 404 aa20.06■□□□□ 0.8
VPS53-210ENST00000571456 MAP9Q49MG5 647 aa20.06■□□□□ 0.8
VPS53-210ENST00000571456 HECTD2Q5U5R9 776 aa20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms