RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 LMF1Q96S06 567 aa15.61■□□□□ 0.09
CLK3-223ENST00000568488 SRPK1Q96SB4 655 aaKnown RBP15.61■□□□□ 0.09
CLK3-223ENST00000568488 NDC1Q9BTX1 674 aa15.61■□□□□ 0.09
CLK3-223ENST00000568488 ACTR10Q9NZ32 417 aa15.61■□□□□ 0.09
CLK3-223ENST00000568488 GLYATL1P3A0A0U1RQE8 302 aa15.6■□□□□ 0.09
CLK3-223ENST00000568488 NDST3O95803 873 aa15.6■□□□□ 0.09
CLK3-223ENST00000568488 GZMAP12544 262 aa15.6■□□□□ 0.09
CLK3-223ENST00000568488 CD99P14209 185 aa15.6■□□□□ 0.09
CLK3-223ENST00000568488 KIR3DL1P43629 444 aa15.6■□□□□ 0.09
CLK3-223ENST00000568488 SMSP52788 366 aa15.6■□□□□ 0.09
CLK3-223ENST00000568488 ART1P52961 327 aa15.6■□□□□ 0.09
CLK3-223ENST00000568488 CASP6P55212 293 aa15.6■□□□□ 0.09
CLK3-223ENST00000568488 RBPJQ06330 500 aa15.6■□□□□ 0.09
CLK3-223ENST00000568488 SLC10A2Q12908 348 aaPredicted RBP15.6■□□□□ 0.09
CLK3-223ENST00000568488 TUBB8Q3ZCM7 444 aa15.6■□□□□ 0.09
CLK3-223ENST00000568488 KIRREL2Q6UWL6 708 aa15.6■□□□□ 0.09
CLK3-223ENST00000568488 SHISA6Q6ZSJ9 500 aa15.6■□□□□ 0.09
CLK3-223ENST00000568488 TRIM73Q86UV7 250 aa15.6■□□□□ 0.09
CLK3-223ENST00000568488 LILRA3Q8N6C8 439 aaPredicted RBP15.6■□□□□ 0.09
CLK3-223ENST00000568488 C19orf47Q8N9M1 422 aaKnown RBP15.6■□□□□ 0.09
CLK3-223ENST00000568488 SPATA22Q8NHS9 363 aa15.6■□□□□ 0.09
CLK3-223ENST00000568488 ENOX1Q8TC92 643 aaKnown RBP15.6■□□□□ 0.09
CLK3-223ENST00000568488 TRIM11Q96F44 468 aa15.6■□□□□ 0.09
CLK3-223ENST00000568488 XKR8Q9H6D3 395 aa15.6■□□□□ 0.09
CLK3-223ENST00000568488 HAUS4Q9H6D7 363 aa15.6■□□□□ 0.09
CLK3-223ENST00000568488 MCCC2Q9HCC0 563 aa15.6■□□□□ 0.09
CLK3-223ENST00000568488 PLA2G3Q9NZ20 509 aa15.6■□□□□ 0.09
CLK3-223ENST00000568488 DYTNA2CJ06 578 aa15.59■□□□□ 0.09
CLK3-223ENST00000568488 H3BMH7 237 aa15.59■□□□□ 0.09
CLK3-223ENST00000568488 BUD23O43709 281 aaKnown RBP15.59■□□□□ 0.09
CLK3-223ENST00000568488 PMPCBO75439 489 aa15.59■□□□□ 0.09
CLK3-223ENST00000568488 MYBL1P10243 752 aa15.59■□□□□ 0.09
CLK3-223ENST00000568488 HMGCLP35914 325 aa15.59■□□□□ 0.09
CLK3-223ENST00000568488 UBE2HP62256 183 aa15.59■□□□□ 0.09
CLK3-223ENST00000568488 ADORA2A-AS1P86434 159 aa15.59■□□□□ 0.09
CLK3-223ENST00000568488 TMPRSS15P98073 1019 aa15.59■□□□□ 0.09
CLK3-223ENST00000568488 RBBP7Q16576 425 aa15.59■□□□□ 0.09
CLK3-223ENST00000568488 ZDHHC20Q5W0Z9 365 aa15.59■□□□□ 0.09
CLK3-223ENST00000568488 FAAH2Q6GMR7 532 aa15.59■□□□□ 0.09
CLK3-223ENST00000568488 TLDC1Q6P9B6 456 aa15.59■□□□□ 0.09
CLK3-223ENST00000568488 DAAM2Q86T65 1068 aa15.59■□□□□ 0.09
CLK3-223ENST00000568488 AMIGO1Q86WK6 493 aa15.59■□□□□ 0.09
CLK3-223ENST00000568488 PHC3Q8NDX5 983 aa15.59■□□□□ 0.09
CLK3-223ENST00000568488 OR52E1Q8NGJ3 308 aa15.59■□□□□ 0.09
CLK3-223ENST00000568488 FAM71BQ8TC56 605 aa15.59■□□□□ 0.09
CLK3-223ENST00000568488 TBRG4Q969Z0 631 aaKnown RBP eCLIP15.59■□□□□ 0.09
CLK3-223ENST00000568488 ZNF830Q96NB3 372 aaPredicted RBP15.59■□□□□ 0.09
CLK3-223ENST00000568488 TRIM56Q9BRZ2 755 aaKnown RBP15.59■□□□□ 0.09
CLK3-223ENST00000568488 CCM2Q9BSQ5 444 aa15.59■□□□□ 0.09
CLK3-223ENST00000568488 SLC22A11Q9NSA0 550 aa15.59■□□□□ 0.09
CLK3-223ENST00000568488 FANCLQ9NW38 375 aa15.59■□□□□ 0.09
CLK3-223ENST00000568488 UBP1Q9NZI7 540 aa15.59■□□□□ 0.09
CLK3-223ENST00000568488 IP6K2Q9UHH9 426 aa15.59■□□□□ 0.09
CLK3-223ENST00000568488 HS3ST3B1Q9Y662 390 aa15.59■□□□□ 0.09
CLK3-223ENST00000568488 ANKRD12Q6UB98 2062 aa15.58■□□□□ 0.09
CLK3-223ENST00000568488 TRAV17A0A0B4J275 112 aa15.58■□□□□ 0.08
CLK3-223ENST00000568488 LGALS16A8MUM7 142 aa15.58■□□□□ 0.08
CLK3-223ENST00000568488 CLDN14O95500 239 aa15.58■□□□□ 0.08
CLK3-223ENST00000568488 MST1P26927 711 aa15.58■□□□□ 0.08
CLK3-223ENST00000568488 ARSEP51690 589 aa15.58■□□□□ 0.08
CLK3-223ENST00000568488 IFI35P80217 286 aaPredicted RBP15.58■□□□□ 0.08
CLK3-223ENST00000568488 AP1B1Q10567 949 aa15.58■□□□□ 0.08
CLK3-223ENST00000568488 PRKG2Q13237 762 aa15.58■□□□□ 0.08
CLK3-223ENST00000568488 ITGA9Q13797 1035 aa15.58■□□□□ 0.08
CLK3-223ENST00000568488 NOMO1Q15155 1222 aa15.58■□□□□ 0.08
CLK3-223ENST00000568488 CDSNQ15517 529 aa15.58■□□□□ 0.08
CLK3-223ENST00000568488 ZIC1Q15915 447 aa15.58■□□□□ 0.08
CLK3-223ENST00000568488 HADHQ16836 314 aaKnown RBP15.58■□□□□ 0.08
CLK3-223ENST00000568488 ZNF800Q2TB10 664 aaPredicted RBP eCLIP15.58■□□□□ 0.086e-8■□□□□ 8.3
CLK3-223ENST00000568488 SPESP1Q6UW49 350 aa15.58■□□□□ 0.08
CLK3-223ENST00000568488 ZNF571Q7Z3V5 609 aaPredicted RBP15.58■□□□□ 0.08
CLK3-223ENST00000568488 ADGRF3Q8IZF5 1079 aa15.58■□□□□ 0.08
CLK3-223ENST00000568488 VPS50Q96JG6 964 aa15.58■□□□□ 0.08
CLK3-223ENST00000568488 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP15.58■□□□□ 0.08
CLK3-223ENST00000568488 SLC25A51Q9H1U9 297 aa15.58■□□□□ 0.08
CLK3-223ENST00000568488 SOX17Q9H6I2 414 aaPredicted RBP15.58■□□□□ 0.08
CLK3-223ENST00000568488 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP15.58■□□□□ 0.08
CLK3-223ENST00000568488 ANAPC7Q9UJX3 599 aa15.58■□□□□ 0.08
CLK3-223ENST00000568488 ABCA2Q9BZC7 2435 aa15.58■□□□□ 0.08
CLK3-223ENST00000568488 PCM1Q15154 2024 aa15.57■□□□□ 0.08
CLK3-223ENST00000568488 DDX3XO00571 662 aaKnown RBP eCLIP15.57■□□□□ 0.08
CLK3-223ENST00000568488 F10P00742 488 aa15.57■□□□□ 0.08
CLK3-223ENST00000568488 PPIDQ08752 370 aaKnown RBP15.57■□□□□ 0.08
CLK3-223ENST00000568488 NKG7Q16617 165 aa15.57■□□□□ 0.08
CLK3-223ENST00000568488 CT47A1Q5JQC4 288 aaPredicted RBP15.57■□□□□ 0.08
CLK3-223ENST00000568488 SARM1Q6SZW1 724 aa15.57■□□□□ 0.08
CLK3-223ENST00000568488 TTLL10Q6ZVT0 673 aa15.57■□□□□ 0.08
CLK3-223ENST00000568488 OVCH1Q7RTY7 1134 aa15.57■□□□□ 0.08
CLK3-223ENST00000568488 SLC25A41Q8N5S1 370 aa15.57■□□□□ 0.08
CLK3-223ENST00000568488 PQLC3Q8N755 202 aa15.57■□□□□ 0.08
CLK3-223ENST00000568488 NIPA2Q8N8Q9 360 aa15.57■□□□□ 0.08
CLK3-223ENST00000568488 ZNF398Q8TD17 642 aa15.57■□□□□ 0.08
CLK3-223ENST00000568488 DTX3LQ8TDB6 740 aa15.57■□□□□ 0.08
CLK3-223ENST00000568488 ERGIC2Q96RQ1 377 aa15.57■□□□□ 0.08
CLK3-223ENST00000568488 ZNF670Q9BS34 389 aa15.57■□□□□ 0.08
CLK3-223ENST00000568488 TFB2MQ9H5Q4 396 aaKnown RBP15.57■□□□□ 0.08
CLK3-223ENST00000568488 IL17CQ9P0M4 197 aa15.57■□□□□ 0.08
CLK3-223ENST00000568488 PTGFRNQ9P2B2 879 aa15.57■□□□□ 0.08
CLK3-223ENST00000568488 HEY1Q9Y5J3 304 aa15.57■□□□□ 0.08
CLK3-223ENST00000568488 SPG11Q96JI7 2443 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms