RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 ABCF3Q9NUQ8 709 aa4.43□□□□□ -1.7
LINC00560-201ENST00000564593 SLC38A7Q9NVC3 462 aa4.43□□□□□ -1.7
LINC00560-201ENST00000564593 PTTG2Q9NZH5 202 aa4.43□□□□□ -1.7
LINC00560-201ENST00000564593 CPSF3Q9UKF6 684 aaKnown RBP4.43□□□□□ -1.7
LINC00560-201ENST00000564593 RNF150Q9ULK6 438 aa4.43□□□□□ -1.7
LINC00560-201ENST00000564593 LIPGQ9Y5X9 500 aa4.43□□□□□ -1.7
LINC00560-201ENST00000564593 IGKV2D-30A0A075B6S6 120 aa4.42□□□□□ -1.7
LINC00560-201ENST00000564593 A0A1W2PPQ1 181 aa4.42□□□□□ -1.7
LINC00560-201ENST00000564593 PRR32B1ATL7 298 aa4.42□□□□□ -1.7
LINC00560-201ENST00000564593 ACOT8O14734 319 aa4.42□□□□□ -1.7
LINC00560-201ENST00000564593 SYNCRIPO60506 623 aaKnown RBP4.42□□□□□ -1.7
LINC00560-201ENST00000564593 BAG4O95429 457 aaKnown RBP4.42□□□□□ -1.7
LINC00560-201ENST00000564593 ATP5BP06576 529 aaKnown RBP4.42□□□□□ -1.7
LINC00560-201ENST00000564593 CYP11B2P19099 503 aa4.42□□□□□ -1.7
LINC00560-201ENST00000564593 FMO5P49326 533 aa4.42□□□□□ -1.7
LINC00560-201ENST00000564593 LIMK1P53667 647 aa4.42□□□□□ -1.7
LINC00560-201ENST00000564593 SHQ1Q6PI26 577 aaKnown RBP4.42□□□□□ -1.7
LINC00560-201ENST00000564593 TRAT1Q6PIZ9 186 aa4.42□□□□□ -1.7
LINC00560-201ENST00000564593 DCLRE1AQ6PJP8 1040 aa4.42□□□□□ -1.7
LINC00560-201ENST00000564593 ZNF852Q6ZMS4 543 aa4.42□□□□□ -1.7
LINC00560-201ENST00000564593 DNAJB7Q7Z6W7 309 aaPredicted RBP4.42□□□□□ -1.7
LINC00560-201ENST00000564593 EXOC3L1Q86VI1 746 aa4.42□□□□□ -1.7
LINC00560-201ENST00000564593 NAGSQ8N159 534 aa4.42□□□□□ -1.7
LINC00560-201ENST00000564593 CCAR2Q8N163 923 aaKnown RBP4.42□□□□□ -1.7
LINC00560-201ENST00000564593 CPSF7Q8N684 471 aaKnown RBP4.42□□□□□ -1.7
LINC00560-201ENST00000564593 DOCK7Q96N67 2140 aa4.42□□□□□ -1.7
LINC00560-201ENST00000564593 ZWILCHQ9H900 591 aa4.42□□□□□ -1.7
LINC00560-201ENST00000564593 GRPEL1Q9HAV7 217 aa4.42□□□□□ -1.7
LINC00560-201ENST00000564593 ABT1Q9ULW3 272 aaKnown RBP4.42□□□□□ -1.7
LINC00560-201ENST00000564593 ARHGEF37A1IGU5 675 aa4.41□□□□□ -1.7
LINC00560-201ENST00000564593 PTGESO14684 152 aa4.41□□□□□ -1.7
LINC00560-201ENST00000564593 CTSVO60911 334 aa4.41□□□□□ -1.7
LINC00560-201ENST00000564593 MPZP25189 248 aa4.41□□□□□ -1.7
LINC00560-201ENST00000564593 AZGP1P25311 298 aaKnown RBP4.41□□□□□ -1.7
LINC00560-201ENST00000564593 DVL1P1P54792 670 aaPredicted RBP4.41□□□□□ -1.7
LINC00560-201ENST00000564593 PITX1P78337 314 aaPredicted RBP4.41□□□□□ -1.7
LINC00560-201ENST00000564593 PRKCZQ05513 592 aa4.41□□□□□ -1.7
LINC00560-201ENST00000564593 GAGE5Q13069 117 aa4.41□□□□□ -1.7
LINC00560-201ENST00000564593 GAGE6Q13070 117 aa4.41□□□□□ -1.7
LINC00560-201ENST00000564593 MFAP5Q13361 173 aa4.41□□□□□ -1.7
LINC00560-201ENST00000564593 SCARB2Q14108 478 aa4.41□□□□□ -1.7
LINC00560-201ENST00000564593 ASIC2Q16515 512 aa4.41□□□□□ -1.7
LINC00560-201ENST00000564593 MFSD12Q6NUT3 480 aa4.41□□□□□ -1.7
LINC00560-201ENST00000564593 TMPRSS11BQ86T26 416 aa4.41□□□□□ -1.7
LINC00560-201ENST00000564593 CFAP206Q8IYR0 622 aa4.41□□□□□ -1.7
LINC00560-201ENST00000564593 ARHGAP24Q8N264 748 aa4.41□□□□□ -1.7
LINC00560-201ENST00000564593 MAB21L3Q8N8X9 362 aa4.41□□□□□ -1.7
LINC00560-201ENST00000564593 POC1AQ8NBT0 407 aa4.41□□□□□ -1.7
LINC00560-201ENST00000564593 SSMEM1Q8WWF3 244 aa4.41□□□□□ -1.7
LINC00560-201ENST00000564593 SYN2Q92777 582 aaPredicted RBP4.41□□□□□ -1.7
LINC00560-201ENST00000564593 CD101Q93033 1021 aa4.41□□□□□ -1.7
LINC00560-201ENST00000564593 EXT2Q93063 718 aa4.41□□□□□ -1.7
LINC00560-201ENST00000564593 SPSB1Q96BD6 273 aa4.41□□□□□ -1.7
LINC00560-201ENST00000564593 LRRC3BQ96PB8 259 aa4.41□□□□□ -1.7
LINC00560-201ENST00000564593 FEVQ99581 238 aa4.41□□□□□ -1.7
LINC00560-201ENST00000564593 EGFL8Q99944 293 aa4.41□□□□□ -1.7
LINC00560-201ENST00000564593 VN1R1Q9GZP7 353 aa4.41□□□□□ -1.7
LINC00560-201ENST00000564593 RETREG1Q9H6L5 497 aa4.41□□□□□ -1.7
LINC00560-201ENST00000564593 APOBEC3GQ9HC16 384 aaKnown RBP4.41□□□□□ -1.7
LINC00560-201ENST00000564593 OLFML3Q9NRN5 406 aa4.41□□□□□ -1.7
LINC00560-201ENST00000564593 FRMD4AQ9P2Q2 1039 aaPredicted RBP4.41□□□□□ -1.7
LINC00560-201ENST00000564593 B3GAT1Q9P2W7 334 aa4.41□□□□□ -1.7
LINC00560-201ENST00000564593 SOS1Q07889 1333 aaPredicted RBP4.41□□□□□ -1.7
LINC00560-201ENST00000564593 IGLV5-45A0A087WSX0 123 aa4.4□□□□□ -1.7
LINC00560-201ENST00000564593 A0A1W2PPI3 338 aa4.4□□□□□ -1.7
LINC00560-201ENST00000564593 SMTNL1A8MU46 457 aa4.4□□□□□ -1.7
LINC00560-201ENST00000564593 C16orf97H3BN30 126 aa4.4□□□□□ -1.7
LINC00560-201ENST00000564593 CLDN4O14493 209 aa4.4□□□□□ -1.7
LINC00560-201ENST00000564593 CAPN9O14815 690 aa4.4□□□□□ -1.7
LINC00560-201ENST00000564593 WDR46O15213 610 aaKnown RBP4.4□□□□□ -1.7
LINC00560-201ENST00000564593 HSP90AB1P08238 724 aaKnown RBP4.4□□□□□ -1.7
LINC00560-201ENST00000564593 DGKAP23743 735 aa4.4□□□□□ -1.7
LINC00560-201ENST00000564593 CCKARP32238 428 aa4.4□□□□□ -1.7
LINC00560-201ENST00000564593 HOXA1P49639 335 aaPredicted RBP4.4□□□□□ -1.7
LINC00560-201ENST00000564593 ASCL1P50553 236 aa4.4□□□□□ -1.7
LINC00560-201ENST00000564593 THOP1P52888 689 aa4.4□□□□□ -1.7
LINC00560-201ENST00000564593 MAPK12P53778 367 aa4.4□□□□□ -1.7
LINC00560-201ENST00000564593 POLR2LP62875 67 aaKnown RBP4.4□□□□□ -1.7
LINC00560-201ENST00000564593 RBP5P82980 135 aa4.4□□□□□ -1.7
LINC00560-201ENST00000564593 MZT1Q08AG7 82 aa4.4□□□□□ -1.7
LINC00560-201ENST00000564593 BFSP1Q12934 665 aa4.4□□□□□ -1.7
LINC00560-201ENST00000564593 KIR2DS3Q14952 304 aa4.4□□□□□ -1.7
LINC00560-201ENST00000564593 PRR27Q6MZM9 219 aa4.4□□□□□ -1.7
LINC00560-201ENST00000564593 CAVIN1Q6NZI2 390 aaKnown RBP4.4□□□□□ -1.7
LINC00560-201ENST00000564593 PET117Q6UWS5 81 aa4.4□□□□□ -1.7
LINC00560-201ENST00000564593 LINGO4Q6UY18 593 aa4.4□□□□□ -1.7
LINC00560-201ENST00000564593 OR8H3Q8N146 312 aa4.4□□□□□ -1.7
LINC00560-201ENST00000564593 METTL27Q8N6F8 245 aaPredicted RBP4.4□□□□□ -1.7
LINC00560-201ENST00000564593 OR13A1Q8NGR1 328 aa4.4□□□□□ -1.7
LINC00560-201ENST00000564593 DEPDC1BQ8WUY9 529 aa4.4□□□□□ -1.7
LINC00560-201ENST00000564593 MOB3AQ96BX8 217 aa4.4□□□□□ -1.7
LINC00560-201ENST00000564593 OTUB1Q96FW1 271 aaPredicted RBP4.4□□□□□ -1.7
LINC00560-201ENST00000564593 SGK494Q96LW2 274 aa4.4□□□□□ -1.7
LINC00560-201ENST00000564593 C17orf77Q96MU5 243 aa4.4□□□□□ -1.7
LINC00560-201ENST00000564593 MUS81Q96NY9 551 aa4.4□□□□□ -1.7
LINC00560-201ENST00000564593 CPNE1Q99829 537 aa4.4□□□□□ -1.7
LINC00560-201ENST00000564593 FERMT1Q9BQL6 677 aa4.4□□□□□ -1.7
LINC00560-201ENST00000564593 MGME1Q9BQP7 344 aa4.4□□□□□ -1.7
LINC00560-201ENST00000564593 TRAF4Q9BUZ4 470 aaPredicted RBP4.4□□□□□ -1.7
LINC00560-201ENST00000564593 Q9N2K0 584 aa4.4□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms