RNA–Protein interactions for RNA: ENST00000564228.5

TCF4-222, Transcript of transcription factor 4, human

TSL 1 (best) BASIC

Gene TCF4, Length 1,915 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-222	ENST00000564228	CENPX	A8MT69	81 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228		H0Y626	953 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	HAT1	O14929	419 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	AXIN1	O15169	862 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	TBX1	O43435	398 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	CNTN5	O94779	1100 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	TPPP	O94811	219 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	TRIM16	O95361	564 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	NPPA	P01160	153 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	RB1	P06400	928 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	RAP2A	P10114	183 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	ARSA	P15289	507 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	PRKACB	P22694	351 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	RRM2	P31350	389 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	AVPR1A	P37288	418 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	ST13	P50502	369 aa	Known RBP	10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	ISL1	P61371	349 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	MRPS15	P82914	257 aa	Known RBP	10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	GALK2	Q01415	458 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	UBE3A	Q05086	875 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	CAPRIN1	Q14444	709 aa	Known RBP	10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	VEPH1	Q14D04	833 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	PAFAH1B3	Q15102	231 aa	Known RBP	10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	CARTPT	Q16568	116 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	UGT3A2	Q3SY77	523 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	PYCR3	Q53H96	274 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	CEP78	Q5JTW2	689 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	ZNF691	Q5VV52	312 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	BLOC1S3	Q6QNY0	202 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	CCBE1	Q6UXH8	406 aa	Predicted RBP	10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	C14orf80	Q86SX3	495 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	TAC4	Q86UU9	113 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	STK32C	Q86UX6	486 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	ZDHHC13	Q8IUH4	622 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	PLD3	Q8IV08	490 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	TCEAL8	Q8IYN2	117 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	CCDC185	Q8N715	623 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	MRPL43	Q8N983	215 aa	Known RBP	10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	DEPDC7	Q96QD5	511 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	OMD	Q99983	421 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	KIFC1	Q9BW19	673 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	ALOXE3	Q9BYJ1	711 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	NXF2	Q9GZY0	626 aa	Known RBP	10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	KAT8	Q9H7Z6	458 aa	Known RBP	10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	TNFRSF12A	Q9NP84	129 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	SLC52A3	Q9NQ40	469 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	TLR8	Q9NR97	1041 aa	Known RBP	10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	SDR39U1	Q9NRG7	319 aa	Predicted RBP	10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	IL37	Q9NZH6	218 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	MSRA	Q9UJ68	235 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	MFHAS1	Q9Y4C4	1052 aa		10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	OAS3	Q9Y6K5	1087 aa	Known RBP	10.87	□□□□□ -0.67
TCF4-222	ENST00000564228	FAM92A	A1XBS5	289 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	CCDC154	A6NI56	674 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	METTL15	A6NJ78	407 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	PDZK1P1	A8MUH7	402 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	CCRL2	O00421	344 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	GLUD1	P00367	558 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	APOA1	P02647	267 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	F7	P08709	466 aa	Predicted RBP	10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	TCF3	P15923	654 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	GOT1	P17174	413 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	JUND	P17535	347 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	SAT1	P21673	171 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	EPHB3	P54753	998 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	ERVK-21	P61565	698 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	VBP1	P61758	197 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	PPP2R2B	Q00005	443 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	HSPA14	Q0VDF9	509 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	GRIK2	Q13002	908 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	PLD1	Q13393	1074 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	GPM6B	Q13491	265 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	CAMK1	Q14012	370 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	POU6F1	Q14863	301 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	FAM83E	Q2M2I3	478 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	ZNF404	Q494X3	552 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	VPS26B	Q4G0F5	336 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	FAM98B	Q52LJ0	330 aa	Known RBP	10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	ZC3H12B	Q5HYM0	836 aa	Known RBP	10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	ZNF470	Q6ECI4	717 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	PRR23B	Q6ZRT6	265 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	PID1	Q7Z2X4	250 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	ADAMTSL2	Q86TH1	951 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	RALGPS2	Q86X27	583 aa	Predicted RBP	10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	CEP97	Q8IW35	865 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	GALNT12	Q8IXK2	581 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	UBQLNL	Q8IYU4	475 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	SIX5	Q8N196	739 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	GABPB2	Q8TAK5	448 aa	Predicted RBP	10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	HEXDC	Q8WVB3	486 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	FIG4	Q92562	907 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	RNF34	Q969K3	372 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	L3HYPDH	Q96EM0	354 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	NSMCE2	Q96MF7	247 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	RNF145	Q96MT1	663 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	SAMD11	Q96NU1	681 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	ASB2	Q96Q27	587 aa		10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	RBM4B	Q9BQ04	359 aa	Known RBP	10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	RBM4	Q9BWF3	364 aa	Known RBP	10.86	□□□□□ -0.67
TCF4-222	ENST00000564228	GSTO2	Q9H4Y5	243 aa		10.86	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms