RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 ZNF280BQ86YH2 543 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 THEM5Q8N1Q8 247 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 CNIH3Q8TBE1 160 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 RDH11Q8TC12 318 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 TMBIM1Q969X1 311 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 RIPOR3Q96MK2 946 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 NECTIN4Q96NY8 510 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 MBOAT4Q96T53 435 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 PHOX2BQ99453 314 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 C1QTNF1Q9BXJ1 281 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 DCSTAMPQ9H295 470 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 EIF2B3Q9NR50 452 aaKnown RBP13.07□□□□□ -0.32
CLK3-206ENST00000562078 MAGED2Q9UNF1 606 aaPredicted RBP13.07□□□□□ -0.32
CLK3-206ENST00000562078 RUVBL2Q9Y230 463 aaKnown RBP13.07□□□□□ -0.32
CLK3-206ENST00000562078 PLK4O00444 970 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 PRLP01236 227 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 CFL1P23528 166 aaKnown RBP13.06□□□□□ -0.32
CLK3-206ENST00000562078 PTPN3P26045 913 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 IL1RL1Q01638 556 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 YWHAHQ04917 246 aaPredicted RBP13.06□□□□□ -0.32
CLK3-206ENST00000562078 GPNMBQ14956 572 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 CES5AQ6NT32 575 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 PDZD4Q76G19 769 aaPredicted RBP13.06□□□□□ -0.32
CLK3-206ENST00000562078 DEFB128Q7Z7B8 93 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 SPNS2Q8IVW8 549 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 OR4M1Q8NGD0 313 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 LRRC20Q8TCA0 184 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 MCOLN3Q8TDD5 553 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 PAWRQ96IZ0 340 aaKnown RBP13.06□□□□□ -0.32
CLK3-206ENST00000562078 BBS2Q9BXC9 721 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 ZFP14Q9HCL3 533 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 POLR3BQ9NW08 1133 aaPredicted RBP13.06□□□□□ -0.32
CLK3-206ENST00000562078 EHD3Q9NZN3 535 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 PCDH10Q9P2E7 1040 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 XPR1Q9UBH6 696 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 AASSQ9UDR5 926 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 MID2Q9UJV3 735 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 NUP50Q9UKX7 468 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 VANGL2Q9ULK5 521 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 GREB1Q4ZG55 1949 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 METTL15A6NJ78 407 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 EFCAB9A8MZ26 197 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 TBC1D4O60343 1298 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 POLBP06746 335 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 PSKH1P11801 424 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 MLNP12872 115 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 DEFA1P59665 94 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 DEFA3P59666 94 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 B2MP61769 119 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 TRAF3Q13114 568 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 GPR50Q13585 617 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 UGT3A2Q3SY77 523 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 PARP15Q460N3 678 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 RABL3Q5HYI8 236 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 CLLU1OSQ5K130 101 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 HORMAD1Q86X24 394 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 SPATA2LQ8IUW3 424 aaPredicted RBP13.06□□□□□ -0.32
CLK3-206ENST00000562078 ABI1Q8IZP0 508 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 HS3ST5Q8IZT8 346 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 EID3Q8N140 333 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 KIAA1958Q8N8K9 716 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 PAPD5Q8NDF8 572 aaKnown RBP13.06□□□□□ -0.32
CLK3-206ENST00000562078 STYXQ8WUJ0 223 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 ZNF669Q96BR6 464 aaPredicted RBP13.06□□□□□ -0.32
CLK3-206ENST00000562078 TOX2Q96NM4 488 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 MMP27Q9H306 513 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 PIF1Q9H611 641 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 C11orf49Q9H6J7 331 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 ENTPD7Q9NQZ7 604 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 TMEM161AQ9NX61 479 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 TEKT2Q9UIF3 430 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 LRFN2Q9ULH4 789 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 AP3M1Q9Y2T2 418 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 PCDHGB6Q9Y5F9 930 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 ANKRD12Q6UB98 2062 aa13.06□□□□□ -0.32
CLK3-206ENST00000562078 A0A0J9YYE9 177 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 TEX51A0A1B0GUA7 166 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 NEMP2A6NFY4 417 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 H0Y626 953 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 APOA4P06727 396 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 IL7P13232 177 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 CAPN3P20807 821 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 DNAJB1P25685 340 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 PGFP49763 221 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 KRR1Q13601 381 aaKnown RBP13.05□□□□□ -0.32
CLK3-206ENST00000562078 ZNF460Q14592 562 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 CLCA4Q14CN2 919 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 LRRC26Q2I0M4 334 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 NOMO2Q5JPE7 1267 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 ZNF517Q6ZMY9 492 aaPredicted RBP13.05□□□□□ -0.32
CLK3-206ENST00000562078 CELF6Q96J87 481 aaKnown RBP13.05□□□□□ -0.32
CLK3-206ENST00000562078 TM9SF2Q99805 663 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 RHNO1Q9BSD3 238 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 GON7Q9BXV9 100 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 UCK2Q9BZX2 261 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 NUAK2Q9H093 628 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 MEAF6Q9HAF1 191 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 TMEM39AQ9NV64 488 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 PCDHB7Q9Y5E2 793 aa13.05□□□□□ -0.32
CLK3-206ENST00000562078 MKI67P46013 3256 aaKnown RBP13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms