RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 ATP6V0D1P61421 351 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 RPS14P62263 151 aaKnown RBP5.33□□□□□ -1.56
VPS13C-209ENST00000560637 CLCQ05315 142 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 PTK2BQ14289 1009 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 RASA2Q15283 850 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 CACHD1Q5VU97 1274 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 MLIPQ5VWP3 458 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 LYPLAL1Q5VWZ2 237 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 LIPMQ5VYY2 423 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 LYSMD4Q5XG99 296 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 FAM43BQ6ZT52 329 aaPredicted RBP5.33□□□□□ -1.56
VPS13C-209ENST00000560637 ZNF572Q7Z3I7 529 aaPredicted RBP5.33□□□□□ -1.56
VPS13C-209ENST00000560637 ANKRD46Q86W74 232 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 AADATQ8N5Z0 425 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 FBXO30Q8TB52 745 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 PIWIL2Q8TC59 973 aaKnown RBP5.33□□□□□ -1.56
VPS13C-209ENST00000560637 LKAAEAR1Q8TD35 194 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 RERGQ96A58 199 aaPredicted RBP5.33□□□□□ -1.56
VPS13C-209ENST00000560637 BIRC7Q96CA5 298 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 TCF12Q99081 682 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 APOOQ9BUR5 198 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 DPY30Q9C005 99 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 EQTNQ9NQ60 294 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 DNAJC11Q9NVH1 559 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 ZNF490Q9ULM2 529 aaPredicted RBP5.33□□□□□ -1.56
VPS13C-209ENST00000560637 EIF3LQ9Y262 564 aaKnown RBP5.33□□□□□ -1.56
VPS13C-209ENST00000560637 A0A0G2JMZ2 1700 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 PRAMEF33A0A0G2JMD5 474 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 OR6C74A6NCV1 312 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 GLOD5A6NK44 160 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 A8MUA0 341 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 AZIN1O14977 448 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 OLFM2O95897 454 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 MMP2P08253 660 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 ZNF37AP17032 561 aaPredicted RBP5.33□□□□□ -1.56
VPS13C-209ENST00000560637 PFKLP17858 780 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 GABRG2P18507 467 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 RPL14P50914 215 aaKnown RBP5.33□□□□□ -1.56
VPS13C-209ENST00000560637 ADPRHP54922 357 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 HNRNPH2P55795 449 aaKnown RBP5.33□□□□□ -1.56
VPS13C-209ENST00000560637 MRPS21P82921 87 aaKnown RBP5.33□□□□□ -1.56
VPS13C-209ENST00000560637 CDK3Q00526 305 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 CTBSQ01459 385 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 ID2Q02363 134 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 PHKG1Q16816 387 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 C1orf146Q5VVC0 180 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 ZDHHC20Q5W0Z9 365 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 AGTRAPQ6RW13 159 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 ZNF621Q6ZSS3 439 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 RTL10Q7L3V2 364 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 PHF6Q8IWS0 365 aaKnown RBP eCLIP5.33□□□□□ -1.56
VPS13C-209ENST00000560637 C2CD4AQ8NCU7 369 aaPredicted RBP5.33□□□□□ -1.56
VPS13C-209ENST00000560637 OR2T34Q8NGX1 318 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 DTD2Q96FN9 168 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 LRIG1Q96JA1 1093 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 SLC30A3Q99726 388 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 OR51B5Q9H339 312 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 TRIM39Q9HCM9 518 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 MMP17Q9ULZ9 603 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 GPR34Q9UPC5 381 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 ANKRD6Q9Y2G4 727 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 TRAF6Q9Y4K3 522 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 COLEC10Q9Y6Z7 277 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 CHD7Q9P2D1 2997 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 LOC285095A0A1B0GVY8 99 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 FEZF1A0PJY2 475 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 A8MT66 165 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 RTCAO00442 366 aaKnown RBP5.32□□□□□ -1.56
VPS13C-209ENST00000560637 PPP6CO00743 305 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 FCHO1O14526 889 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 KMOO15229 486 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 ZNF217O75362 1048 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 SLC16A8O95907 504 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 TSHRP16473 764 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 CD38P28907 300 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 FOXN2P32314 431 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 EPHA5P54756 1037 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 PKNOX1P55347 436 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 MAZP56270 477 aaKnown RBP5.32□□□□□ -1.56
VPS13C-209ENST00000560637 RPL26P61254 145 aaKnown RBP5.32□□□□□ -1.56
VPS13C-209ENST00000560637 GTF2H2Q13888 395 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 SLBPQ14493 270 aaKnown RBP eCLIP5.32□□□□□ -1.56
VPS13C-209ENST00000560637 PCBP2Q15366 365 aaKnown RBP eCLIP5.32□□□□□ -1.56
VPS13C-209ENST00000560637 TGFBIQ15582 683 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 TAZQ16635 292 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 AASDHQ4L235 1098 aaPredicted RBP5.32□□□□□ -1.56
VPS13C-209ENST00000560637 TIGD2Q4W5G0 525 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 GTF2H2CQ6P1K8 395 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 SNX32Q86XE0 403 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 ARHGAP24Q8N264 748 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 AGGF1Q8N302 714 aaeCLIP5.32□□□□□ -1.56
VPS13C-209ENST00000560637 RASGEF1AQ8N9B8 481 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 RHBDD1Q8TEB9 315 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 ATL1Q8WXF7 558 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 RAB7BQ96AH8 199 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 RSRC1Q96IZ7 334 aaKnown RBP5.32□□□□□ -1.56
VPS13C-209ENST00000560637 FAM129BQ96TA1 746 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 GPR22Q99680 433 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 EBF4Q9BQW3 602 aa5.32□□□□□ -1.56
VPS13C-209ENST00000560637 FGF22Q9HCT0 170 aa5.32□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms