RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 RPP25Q9BUL9 199 aaKnown RBP3.72□□□□□ -1.81
VPS13C-208ENST00000559119 SDR39U1Q9NRG7 319 aaPredicted RBP3.72□□□□□ -1.81
VPS13C-208ENST00000559119 SAGE1Q9NXZ1 904 aa3.72□□□□□ -1.81
VPS13C-208ENST00000559119 GPR83Q9NYM4 423 aa3.72□□□□□ -1.81
VPS13C-208ENST00000559119 CRYL1Q9Y2S2 319 aa3.72□□□□□ -1.81
VPS13C-208ENST00000559119 ANGPTL3Q9Y5C1 460 aa3.72□□□□□ -1.81
VPS13C-208ENST00000559119 SEC23IPQ9Y6Y8 1000 aaKnown RBP3.72□□□□□ -1.81
VPS13C-208ENST00000559119 CROCCQ5TZA2 2017 aa3.71□□□□□ -1.81
VPS13C-208ENST00000559119 NMBRP28336 390 aa3.71□□□□□ -1.82
VPS13C-208ENST00000559119 RPS3AP61247 264 aaKnown RBP3.71□□□□□ -1.82
VPS13C-208ENST00000559119 CX3CL1P78423 397 aa3.71□□□□□ -1.82
VPS13C-208ENST00000559119 MED22Q15528 200 aa3.71□□□□□ -1.82
VPS13C-208ENST00000559119 CPXCR1Q8N123 301 aa3.71□□□□□ -1.82
VPS13C-208ENST00000559119 KCNG4Q8TDN1 519 aa3.71□□□□□ -1.82
VPS13C-208ENST00000559119 RNF128Q8TEB7 428 aa3.71□□□□□ -1.82
VPS13C-208ENST00000559119 JMJD4Q9H9V9 463 aa3.71□□□□□ -1.82
VPS13C-208ENST00000559119 TUBE1Q9UJT0 475 aa3.71□□□□□ -1.82
VPS13C-208ENST00000559119 BCL2L11O43521 198 aa3.7□□□□□ -1.82
VPS13C-208ENST00000559119 DFFBO76075 338 aa3.7□□□□□ -1.82
VPS13C-208ENST00000559119 ITIH1P19827 911 aa3.7□□□□□ -1.82
VPS13C-208ENST00000559119 CCR9P51686 369 aa3.7□□□□□ -1.82
VPS13C-208ENST00000559119 PAX8Q06710 450 aa3.7□□□□□ -1.82
VPS13C-208ENST00000559119 TBCEQ15813 527 aaPredicted RBP3.7□□□□□ -1.82
VPS13C-208ENST00000559119 KLHL26Q53HC5 615 aa3.7□□□□□ -1.82
VPS13C-208ENST00000559119 MDH1BQ5I0G3 518 aa3.7□□□□□ -1.82
VPS13C-208ENST00000559119 INTS11Q5TA45 600 aaKnown RBP3.7□□□□□ -1.82
VPS13C-208ENST00000559119 NCEH1Q6PIU2 408 aa3.7□□□□□ -1.82
VPS13C-208ENST00000559119 CPLX4Q7Z7G2 160 aa3.7□□□□□ -1.82
VPS13C-208ENST00000559119 HPS6Q86YV9 775 aa3.7□□□□□ -1.82
VPS13C-208ENST00000559119 POM121L12Q8N7R1 296 aa3.7□□□□□ -1.82
VPS13C-208ENST00000559119 Q8NBF4 154 aa3.7□□□□□ -1.82
VPS13C-208ENST00000559119 OR10G8Q8NGN5 311 aa3.7□□□□□ -1.82
VPS13C-208ENST00000559119 SMAP2Q8WU79 429 aaPredicted RBP3.7□□□□□ -1.82
VPS13C-208ENST00000559119 CENPTQ96BT3 561 aa3.7□□□□□ -1.82
VPS13C-208ENST00000559119 OR2A14Q96R47 310 aa3.7□□□□□ -1.82
VPS13C-208ENST00000559119 GAL3ST4Q96RP7 486 aa3.7□□□□□ -1.82
VPS13C-208ENST00000559119 VN1R1Q9GZP7 353 aa3.7□□□□□ -1.82
VPS13C-208ENST00000559119 PLK3Q9H4B4 646 aa3.7□□□□□ -1.82
VPS13C-208ENST00000559119 PDP2Q9P2J9 529 aa3.7□□□□□ -1.82
VPS13C-208ENST00000559119 AMACRQ9UHK6 382 aa3.7□□□□□ -1.82
VPS13C-208ENST00000559119 GRID1Q9ULK0 1009 aa3.7□□□□□ -1.82
VPS13C-208ENST00000559119 NENFQ9UMX5 172 aa3.7□□□□□ -1.82
VPS13C-208ENST00000559119 PCDHGA5Q9Y5G8 931 aa3.7□□□□□ -1.82
VPS13C-208ENST00000559119 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP3.7□□□□□ -1.82
VPS13C-208ENST00000559119 LYVE1Q9Y5Y7 322 aa3.7□□□□□ -1.82
VPS13C-208ENST00000559119 A0A1W2PPR1 153 aa3.69□□□□□ -1.82
VPS13C-208ENST00000559119 C15orf61A6NNL5 157 aa3.69□□□□□ -1.82
VPS13C-208ENST00000559119 GAPDHSO14556 408 aaPredicted RBP3.69□□□□□ -1.82
VPS13C-208ENST00000559119 HS6ST1O60243 411 aa3.69□□□□□ -1.82
VPS13C-208ENST00000559119 CLEC3BP05452 202 aa3.69□□□□□ -1.82
VPS13C-208ENST00000559119 SRPRAP08240 638 aaKnown RBP3.69□□□□□ -1.82
VPS13C-208ENST00000559119 HSPA1AP0DMV8 641 aaKnown RBP3.69□□□□□ -1.82
VPS13C-208ENST00000559119 HSPA1BP0DMV9 641 aaKnown RBP3.69□□□□□ -1.82
VPS13C-208ENST00000559119 CDH2P19022 906 aaPredicted RBP3.69□□□□□ -1.82
VPS13C-208ENST00000559119 PDX1P52945 283 aa3.69□□□□□ -1.82
VPS13C-208ENST00000559119 CYCSP99999 105 aaKnown RBP3.69□□□□□ -1.82
VPS13C-208ENST00000559119 DMPKQ09013 629 aa3.69□□□□□ -1.82
VPS13C-208ENST00000559119 CALCOCO2Q13137 446 aa3.69□□□□□ -1.82
VPS13C-208ENST00000559119 GRTP1Q5TC63 336 aa3.69□□□□□ -1.82
VPS13C-208ENST00000559119 GKAP1Q5VSY0 366 aaPredicted RBP3.69□□□□□ -1.82
VPS13C-208ENST00000559119 CFAP77Q6ZQR2 320 aa3.69□□□□□ -1.82
VPS13C-208ENST00000559119 KIRREL3Q8IZU9 778 aa3.69□□□□□ -1.82
VPS13C-208ENST00000559119 VANGL1Q8TAA9 524 aaPredicted RBP3.69□□□□□ -1.82
VPS13C-208ENST00000559119 POMGNT1Q8WZA1 660 aa3.69□□□□□ -1.82
VPS13C-208ENST00000559119 UBN1Q9NPG3 1134 aa3.69□□□□□ -1.82
VPS13C-208ENST00000559119 TEX10Q9NXF1 929 aaPredicted RBP3.69□□□□□ -1.82
VPS13C-208ENST00000559119 CMAHPQ9Y471 501 aa3.69□□□□□ -1.82
VPS13C-208ENST00000559119 ZNF646O15015 1829 aaPredicted RBP3.68□□□□□ -1.82
VPS13C-208ENST00000559119 CYP2A7P20853 494 aa3.68□□□□□ -1.82
VPS13C-208ENST00000559119 PRKACGP22612 351 aa3.68□□□□□ -1.82
VPS13C-208ENST00000559119 LEPRP48357 1165 aaKnown RBP3.68□□□□□ -1.82
VPS13C-208ENST00000559119 B3GALT5-AS1P59052 145 aa3.68□□□□□ -1.82
VPS13C-208ENST00000559119 IKQ13123 557 aaPredicted RBP3.68□□□□□ -1.82
VPS13C-208ENST00000559119 MOGAT2Q3SYC2 334 aa3.68□□□□□ -1.82
VPS13C-208ENST00000559119 HIGD2BQ4VC39 106 aa3.68□□□□□ -1.82
VPS13C-208ENST00000559119 SARM1Q6SZW1 724 aa3.68□□□□□ -1.82
VPS13C-208ENST00000559119 TBC1D1Q86TI0 1168 aaPredicted RBP3.68□□□□□ -1.82
VPS13C-208ENST00000559119 TEX11Q8IYF3 940 aa3.68□□□□□ -1.82
VPS13C-208ENST00000559119 PDILTQ8N807 584 aa3.68□□□□□ -1.82
VPS13C-208ENST00000559119 C17orf47Q8NEP4 570 aa3.68□□□□□ -1.82
VPS13C-208ENST00000559119 MIPOL1Q8TD10 442 aa3.68□□□□□ -1.82
VPS13C-208ENST00000559119 PRICKLE1Q96MT3 831 aaPredicted RBP3.68□□□□□ -1.82
VPS13C-208ENST00000559119 FNBP1Q96RU3 617 aa3.68□□□□□ -1.82
VPS13C-208ENST00000559119 C1QTNF1Q9BXJ1 281 aa3.68□□□□□ -1.82
VPS13C-208ENST00000559119 ARRDC1-AS1Q9H2J1 176 aa3.68□□□□□ -1.82
VPS13C-208ENST00000559119 CHST11Q9NPF2 352 aa3.68□□□□□ -1.82
VPS13C-208ENST00000559119 KLF2Q9Y5W3 355 aaPredicted RBP3.68□□□□□ -1.82
VPS13C-208ENST00000559119 TO15178 435 aa3.67□□□□□ -1.82
VPS13C-208ENST00000559119 CAMPP49913 170 aa3.67□□□□□ -1.82
VPS13C-208ENST00000559119 TMEM50BP56557 158 aa3.67□□□□□ -1.82
VPS13C-208ENST00000559119 PNRC1Q12796 327 aaPredicted RBP3.67□□□□□ -1.82
VPS13C-208ENST00000559119 C20orf194Q5TEA3 1177 aa3.67□□□□□ -1.82
VPS13C-208ENST00000559119 LYSMD4Q5XG99 296 aa3.67□□□□□ -1.82
VPS13C-208ENST00000559119 JADE1Q6IE81 842 aa3.67□□□□□ -1.82
VPS13C-208ENST00000559119 ADGRA1Q86SQ6 560 aa3.67□□□□□ -1.82
VPS13C-208ENST00000559119 SCYL3Q8IZE3 742 aa3.67□□□□□ -1.82
VPS13C-208ENST00000559119 GOLGA6L2Q8N9W4 650 aaPredicted RBP3.67□□□□□ -1.82
VPS13C-208ENST00000559119 PUS3Q9BZE2 481 aaKnown RBP3.67□□□□□ -1.82
VPS13C-208ENST00000559119 S1PR5Q9H228 398 aa3.67□□□□□ -1.82
VPS13C-208ENST00000559119 SH2D4AQ9H788 454 aa3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms