RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 CCDC74AQ96AQ1 378 aa12.49□□□□□ -0.41
SHMT2-227ENST00000557269 UBXN10Q96LJ8 280 aa12.49□□□□□ -0.41
SHMT2-227ENST00000557269 HGH1Q9BTY7 390 aa12.49□□□□□ -0.41
SHMT2-227ENST00000557269 TMEM109Q9BVC6 243 aa12.49□□□□□ -0.41
SHMT2-227ENST00000557269 IGSF5Q9NSI5 407 aa12.49□□□□□ -0.41
SHMT2-227ENST00000557269 TOR4AQ9NXH8 423 aa12.49□□□□□ -0.41
SHMT2-227ENST00000557269 PLAGL1Q9UM63 463 aa12.49□□□□□ -0.41
SHMT2-227ENST00000557269 ASF1AQ9Y294 204 aa12.49□□□□□ -0.41
SHMT2-227ENST00000557269 A0A096LPK6 155 aa12.48□□□□□ -0.41
SHMT2-227ENST00000557269 IQANK1A0A1B0GTG1 560 aa12.48□□□□□ -0.41
SHMT2-227ENST00000557269 ARHGEF33A8MVX0 844 aa12.48□□□□□ -0.41
SHMT2-227ENST00000557269 GFYI3L273 518 aa12.48□□□□□ -0.41
SHMT2-227ENST00000557269 EIF3FO00303 357 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-227ENST00000557269 CDC7O00311 574 aa12.48□□□□□ -0.41
SHMT2-227ENST00000557269 GIPC1O14908 333 aa12.48□□□□□ -0.41
SHMT2-227ENST00000557269 B4GAT1O43505 415 aa12.48□□□□□ -0.41
SHMT2-227ENST00000557269 NUDT21O43809 227 aaKnown RBP12.48□□□□□ -0.41
SHMT2-227ENST00000557269 PSIP1O75475 530 aaKnown RBP12.48□□□□□ -0.41
SHMT2-227ENST00000557269 TOP3BO95985 862 aaKnown RBP12.48□□□□□ -0.41
SHMT2-227ENST00000557269 GLB1P16278 677 aa12.48□□□□□ -0.41
SHMT2-227ENST00000557269 RPIAP49247 311 aa12.48□□□□□ -0.41
SHMT2-227ENST00000557269 ACADVLP49748 655 aa12.48□□□□□ -0.41
SHMT2-227ENST00000557269 OR1D5P58170 312 aa12.48□□□□□ -0.41
SHMT2-227ENST00000557269 CSHL1Q14406 222 aa12.48□□□□□ -0.41
SHMT2-227ENST00000557269 CASP8Q14790 479 aa12.48□□□□□ -0.41
SHMT2-227ENST00000557269 TRIP6Q15654 476 aaKnown RBP12.48□□□□□ -0.41
SHMT2-227ENST00000557269 PHKG1Q16816 387 aa12.48□□□□□ -0.41
SHMT2-227ENST00000557269 LGSNQ5TDP6 509 aa12.48□□□□□ -0.41
SHMT2-227ENST00000557269 UNC5DQ6UXZ4 953 aa12.48□□□□□ -0.41
SHMT2-227ENST00000557269 TMEM26Q6ZUK4 368 aa12.48□□□□□ -0.41
SHMT2-227ENST00000557269 TAOK1Q7L7X3 1001 aa12.48□□□□□ -0.41
SHMT2-227ENST00000557269 ZNF438Q7Z4V0 828 aa12.48□□□□□ -0.41
SHMT2-227ENST00000557269 TRIM48Q8IWZ4 208 aa12.48□□□□□ -0.41
SHMT2-227ENST00000557269 CENPLQ8N0S6 344 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-227ENST00000557269 PLD6Q8N2A8 252 aaKnown RBP12.48□□□□□ -0.41
SHMT2-227ENST00000557269 Q8N9G6 341 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-227ENST00000557269 OR5K2Q8NHB8 316 aa12.48□□□□□ -0.41
SHMT2-227ENST00000557269 IFI44Q8TCB0 444 aa12.48□□□□□ -0.41
SHMT2-227ENST00000557269 KCTD4Q8WVF5 259 aa12.48□□□□□ -0.41
SHMT2-227ENST00000557269 PDLIM5Q96HC4 596 aaKnown RBP12.48□□□□□ -0.41
SHMT2-227ENST00000557269 TBC1D10AQ9BXI6 508 aa12.48□□□□□ -0.41
SHMT2-227ENST00000557269 ROPN1BQ9BZX4 212 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-227ENST00000557269 VPS11Q9H270 941 aa12.48□□□□□ -0.41
SHMT2-227ENST00000557269 TRIT1Q9H3H1 467 aaKnown RBP12.48□□□□□ -0.41
SHMT2-227ENST00000557269 MVB12BQ9H7P6 319 aa12.48□□□□□ -0.41
SHMT2-227ENST00000557269 PPCSQ9HAB8 311 aa12.48□□□□□ -0.41
SHMT2-227ENST00000557269 ROPN1Q9HAT0 212 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-227ENST00000557269 SYTL2Q9HCH5 934 aa12.48□□□□□ -0.41
SHMT2-227ENST00000557269 POT1Q9NUX5 634 aa12.48□□□□□ -0.41
SHMT2-227ENST00000557269 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-227ENST00000557269 CDV3Q9UKY7 258 aaKnown RBP12.48□□□□□ -0.41
SHMT2-227ENST00000557269 ACOT9Q9Y305 439 aa12.48□□□□□ -0.41
SHMT2-227ENST00000557269 SPAARA0A1B0GVQ0 90 aa12.47□□□□□ -0.41
SHMT2-227ENST00000557269 NPEPPSL1A6NEC2 478 aa12.47□□□□□ -0.41
SHMT2-227ENST00000557269 RHPN2P1A8MT19 583 aa12.47□□□□□ -0.41
SHMT2-227ENST00000557269 GOLGA8RI6L899 631 aa12.47□□□□□ -0.41
SHMT2-227ENST00000557269 TNFSF14O43557 240 aa12.47□□□□□ -0.41
SHMT2-227ENST00000557269 ZBTB14O43829 449 aa12.47□□□□□ -0.41
SHMT2-227ENST00000557269 CDH16O75309 829 aa12.47□□□□□ -0.41
SHMT2-227ENST00000557269 CD1DP15813 335 aa12.47□□□□□ -0.41
SHMT2-227ENST00000557269 CSRP1P21291 193 aaKnown RBP12.47□□□□□ -0.41
SHMT2-227ENST00000557269 ACP1P24666 158 aa12.47□□□□□ -0.41
SHMT2-227ENST00000557269 KCNC1P48547 511 aa12.47□□□□□ -0.41
SHMT2-227ENST00000557269 RGS4P49798 205 aa12.47□□□□□ -0.41
SHMT2-227ENST00000557269 KRT33BQ14525 404 aa12.47□□□□□ -0.41
SHMT2-227ENST00000557269 NR1D2Q14995 579 aa12.47□□□□□ -0.41
SHMT2-227ENST00000557269 CEP85LQ5SZL2 805 aa12.47□□□□□ -0.41
SHMT2-227ENST00000557269 NKAIN2Q5VXU1 208 aa12.47□□□□□ -0.41
SHMT2-227ENST00000557269 SH2D5Q6ZV89 423 aa12.47□□□□□ -0.41
SHMT2-227ENST00000557269 SLCO6A1Q86UG4 719 aa12.47□□□□□ -0.41
SHMT2-227ENST00000557269 TBC1D21Q8IYX1 336 aa12.47□□□□□ -0.41
SHMT2-227ENST00000557269 MYO1HQ8N1T3 1032 aa12.47□□□□□ -0.41
SHMT2-227ENST00000557269 NKAPQ8N5F7 415 aaKnown RBP12.47□□□□□ -0.41
SHMT2-227ENST00000557269 OR52E1Q8NGJ3 308 aa12.47□□□□□ -0.41
SHMT2-227ENST00000557269 PTERQ96BW5 349 aa12.47□□□□□ -0.41
SHMT2-227ENST00000557269 NXNL1Q96CM4 212 aa12.47□□□□□ -0.41
SHMT2-227ENST00000557269 MTBPQ96DY7 904 aa12.47□□□□□ -0.41
SHMT2-227ENST00000557269 GPR78Q96P69 363 aa12.47□□□□□ -0.41
SHMT2-227ENST00000557269 CDC6Q99741 560 aa12.47□□□□□ -0.41
SHMT2-227ENST00000557269 CCDC3Q9BQI4 270 aa12.47□□□□□ -0.41
SHMT2-227ENST00000557269 MENTQ9BUN1 341 aa12.47□□□□□ -0.41
SHMT2-227ENST00000557269 XKR8Q9H6D3 395 aa12.47□□□□□ -0.41
SHMT2-227ENST00000557269 KIR3DX1Q9H7L2 352 aa12.47□□□□□ -0.41
SHMT2-227ENST00000557269 ZNF358Q9NW07 568 aa12.47□□□□□ -0.41
SHMT2-227ENST00000557269 NCKIPSDQ9NZQ3 722 aa12.47□□□□□ -0.41
SHMT2-227ENST00000557269 OGFRQ9NZT2 677 aa12.47□□□□□ -0.41
SHMT2-227ENST00000557269 LGALS13Q9UHV8 139 aa12.47□□□□□ -0.41
SHMT2-227ENST00000557269 PDE10AQ9Y233 779 aa12.47□□□□□ -0.41
SHMT2-227ENST00000557269 TDRKHQ9Y2W6 561 aaKnown RBP12.47□□□□□ -0.41
SHMT2-227ENST00000557269 HEBP2Q9Y5Z4 205 aa12.47□□□□□ -0.41
SHMT2-227ENST00000557269 COLEC10Q9Y6Z7 277 aa12.47□□□□□ -0.41
SHMT2-227ENST00000557269 A0A087X1B8 175 aa12.46□□□□□ -0.41
SHMT2-227ENST00000557269 BTN3A1O00481 513 aa12.46□□□□□ -0.41
SHMT2-227ENST00000557269 MPOP05164 745 aa12.46□□□□□ -0.41
SHMT2-227ENST00000557269 PYGBP11216 843 aa12.46□□□□□ -0.41
SHMT2-227ENST00000557269 ALDH4A1P30038 563 aa12.46□□□□□ -0.41
SHMT2-227ENST00000557269 CCL7P80098 99 aa12.46□□□□□ -0.41
SHMT2-227ENST00000557269 BIRC2Q13490 618 aa12.46□□□□□ -0.41
SHMT2-227ENST00000557269 OR4D1Q15615 310 aa12.46□□□□□ -0.41
SHMT2-227ENST00000557269 TSNQ15631 228 aaKnown RBP12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms