RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 SUOXP51687 545 aa3.34□□□□□ -1.87
SCFD1-216ENST00000555550 MRPL12P52815 198 aaKnown RBP3.34□□□□□ -1.87
SCFD1-216ENST00000555550 DCAF7P61962 342 aa3.34□□□□□ -1.87
SCFD1-216ENST00000555550 CX3CL1P78423 397 aa3.34□□□□□ -1.87
SCFD1-216ENST00000555550 PRKCZQ05513 592 aa3.34□□□□□ -1.87
SCFD1-216ENST00000555550 TEAD2Q15562 447 aa3.34□□□□□ -1.87
SCFD1-216ENST00000555550 SGSM1Q2NKQ1 1148 aa3.34□□□□□ -1.87
SCFD1-216ENST00000555550 MDH1BQ5I0G3 518 aa3.34□□□□□ -1.87
SCFD1-216ENST00000555550 TRIM65Q6PJ69 517 aa3.34□□□□□ -1.87
SCFD1-216ENST00000555550 CFAP206Q8IYR0 622 aa3.34□□□□□ -1.87
SCFD1-216ENST00000555550 OR2T11Q8NH01 316 aa3.34□□□□□ -1.87
SCFD1-216ENST00000555550 RNF128Q8TEB7 428 aa3.34□□□□□ -1.87
SCFD1-216ENST00000555550 ZFAND2BQ8WV99 257 aa3.34□□□□□ -1.87
SCFD1-216ENST00000555550 MOCOSQ96EN8 888 aa3.34□□□□□ -1.87
SCFD1-216ENST00000555550 ZNF414Q96IQ9 312 aa3.34□□□□□ -1.87
SCFD1-216ENST00000555550 C18orf12Q96KH6 178 aa3.34□□□□□ -1.87
SCFD1-216ENST00000555550 TIGD1Q96MW7 591 aa3.34□□□□□ -1.87
SCFD1-216ENST00000555550 AGAP3Q96P47 875 aa3.34□□□□□ -1.87
SCFD1-216ENST00000555550 OR6C1Q96RD1 312 aa3.34□□□□□ -1.87
SCFD1-216ENST00000555550 SYT11Q9BT88 431 aa3.34□□□□□ -1.87
SCFD1-216ENST00000555550 MAK16Q9BXY0 300 aaKnown RBP3.34□□□□□ -1.87
SCFD1-216ENST00000555550 ZHX3Q9H4I2 956 aa3.34□□□□□ -1.87
SCFD1-216ENST00000555550 A4GALTQ9NPC4 353 aa3.34□□□□□ -1.87
SCFD1-216ENST00000555550 LARSQ9P2J5 1176 aaKnown RBP3.34□□□□□ -1.87
SCFD1-216ENST00000555550 HACL1Q9UJ83 578 aa3.34□□□□□ -1.87
SCFD1-216ENST00000555550 ZNF318Q5VUA4 2279 aa3.33□□□□□ -1.88
SCFD1-216ENST00000555550 LOC101059948A0A1B0GTJ6 334 aa3.33□□□□□ -1.88
SCFD1-216ENST00000555550 A0A1W2PN81 502 aa3.33□□□□□ -1.88
SCFD1-216ENST00000555550 LNP1A1A4G5 178 aa3.33□□□□□ -1.88
SCFD1-216ENST00000555550 HYKKA2RU49 373 aa3.33□□□□□ -1.88
SCFD1-216ENST00000555550 GAPDHSO14556 408 aaPredicted RBP3.33□□□□□ -1.88
SCFD1-216ENST00000555550 VILLO15195 856 aa3.33□□□□□ -1.88
SCFD1-216ENST00000555550 DCXO43602 365 aa3.33□□□□□ -1.88
SCFD1-216ENST00000555550 ZWINTO95229 277 aa3.33□□□□□ -1.88
SCFD1-216ENST00000555550 CHRNA7P36544 502 aa3.33□□□□□ -1.88
SCFD1-216ENST00000555550 GARSP41250 739 aaKnown RBP3.33□□□□□ -1.88
SCFD1-216ENST00000555550 SLC15A1P46059 708 aa3.33□□□□□ -1.88
SCFD1-216ENST00000555550 ARSEP51690 589 aa3.33□□□□□ -1.88
SCFD1-216ENST00000555550 AIMP2Q13155 320 aaKnown RBP3.33□□□□□ -1.88
SCFD1-216ENST00000555550 XKR6Q5GH73 641 aa3.33□□□□□ -1.88
SCFD1-216ENST00000555550 METTL7BQ6UX53 244 aa3.33□□□□□ -1.88
SCFD1-216ENST00000555550 HAUS6Q7Z4H7 955 aa3.33□□□□□ -1.88
SCFD1-216ENST00000555550 COMMD2Q86X83 199 aa3.33□□□□□ -1.88
SCFD1-216ENST00000555550 HPSE2Q8WWQ2 592 aa3.33□□□□□ -1.88
SCFD1-216ENST00000555550 C16orf70Q9BSU1 422 aa3.33□□□□□ -1.88
SCFD1-216ENST00000555550 CABLES2Q9BTV7 478 aa3.33□□□□□ -1.88
SCFD1-216ENST00000555550 VN1R1Q9GZP7 353 aa3.33□□□□□ -1.88
SCFD1-216ENST00000555550 S1PR5Q9H228 398 aa3.33□□□□□ -1.88
SCFD1-216ENST00000555550 ARHGEF38Q9NXL2 777 aa3.33□□□□□ -1.88
SCFD1-216ENST00000555550 TMEM181Q9P2C4 612 aa3.33□□□□□ -1.88
SCFD1-216ENST00000555550 LAS1LQ9Y4W2 734 aaKnown RBP3.33□□□□□ -1.88
SCFD1-216ENST00000555550 KLF11O14901 512 aa3.32□□□□□ -1.88
SCFD1-216ENST00000555550 XRCC3O43542 346 aa3.32□□□□□ -1.88
SCFD1-216ENST00000555550 TRIM49P0CI25 452 aa3.32□□□□□ -1.88
SCFD1-216ENST00000555550 TRIM49CP0CI26 452 aa3.32□□□□□ -1.88
SCFD1-216ENST00000555550 GJA1P17302 382 aa3.32□□□□□ -1.88
SCFD1-216ENST00000555550 CA4P22748 312 aa3.32□□□□□ -1.88
SCFD1-216ENST00000555550 GABRA5P31644 462 aa3.32□□□□□ -1.88
SCFD1-216ENST00000555550 SNX16P57768 344 aa3.32□□□□□ -1.88
SCFD1-216ENST00000555550 PNRC1Q12796 327 aaPredicted RBP3.32□□□□□ -1.88
SCFD1-216ENST00000555550 IRF3Q14653 427 aa3.32□□□□□ -1.88
SCFD1-216ENST00000555550 GRTP1Q5TC63 336 aa3.32□□□□□ -1.88
SCFD1-216ENST00000555550 LINGO4Q6UY18 593 aa3.32□□□□□ -1.88
SCFD1-216ENST00000555550 LDB1Q86U70 411 aaPredicted RBP3.32□□□□□ -1.88
SCFD1-216ENST00000555550 PIGZQ86VD9 579 aa3.32□□□□□ -1.88
SCFD1-216ENST00000555550 LSMEM2Q8N112 164 aa3.32□□□□□ -1.88
SCFD1-216ENST00000555550 FBXO39Q8N4B4 442 aa3.32□□□□□ -1.88
SCFD1-216ENST00000555550 NIPA2Q8N8Q9 360 aa3.32□□□□□ -1.88
SCFD1-216ENST00000555550 OR2AJ1Q8NGZ0 328 aa3.32□□□□□ -1.88
SCFD1-216ENST00000555550 OR4C3Q8NH37 302 aa3.32□□□□□ -1.88
SCFD1-216ENST00000555550 FGFBP3Q8TAT2 258 aa3.32□□□□□ -1.88
SCFD1-216ENST00000555550 LRRC59Q96AG4 307 aaKnown RBP3.32□□□□□ -1.88
SCFD1-216ENST00000555550 NAP1L4Q99733 375 aaKnown RBP3.32□□□□□ -1.88
SCFD1-216ENST00000555550 NUP85Q9BW27 656 aa3.32□□□□□ -1.88
SCFD1-216ENST00000555550 CLEC7AQ9BXN2 247 aa3.32□□□□□ -1.88
SCFD1-216ENST00000555550 LAT2Q9GZY6 243 aa3.32□□□□□ -1.88
SCFD1-216ENST00000555550 SPATC1LQ9H0A9 340 aa3.32□□□□□ -1.88
SCFD1-216ENST00000555550 DPAGT1Q9H3H5 408 aa3.32□□□□□ -1.88
SCFD1-216ENST00000555550 KCNK15Q9H427 330 aa3.32□□□□□ -1.88
SCFD1-216ENST00000555550 SYNCQ9H7C4 482 aa3.32□□□□□ -1.88
SCFD1-216ENST00000555550 OSER1Q9NX31 292 aa3.32□□□□□ -1.88
SCFD1-216ENST00000555550 ZDHHC2Q9UIJ5 367 aa3.32□□□□□ -1.88
SCFD1-216ENST00000555550 ZHX1Q9UKY1 873 aaPredicted RBP3.32□□□□□ -1.88
SCFD1-216ENST00000555550 GRIP1Q9Y3R0 1128 aa3.32□□□□□ -1.88
SCFD1-216ENST00000555550 ADAMTS9Q9P2N4 1935 aa3.32□□□□□ -1.88
SCFD1-216ENST00000555550 AGRNO00468 2067 aa3.31□□□□□ -1.88
SCFD1-216ENST00000555550 ASTN2O75129 1339 aaPredicted RBP3.31□□□□□ -1.88
SCFD1-216ENST00000555550 SOS1Q07889 1333 aaPredicted RBP3.31□□□□□ -1.88
SCFD1-216ENST00000555550 ZNF644Q9H582 1327 aaPredicted RBP3.31□□□□□ -1.88
SCFD1-216ENST00000555550 E9PQ18 207 aa3.31□□□□□ -1.88
SCFD1-216ENST00000555550 CTDSP2O14595 271 aa3.31□□□□□ -1.88
SCFD1-216ENST00000555550 PRAMEF11O60813 436 aa3.31□□□□□ -1.88
SCFD1-216ENST00000555550 ZBED4O75132 1171 aa3.31□□□□□ -1.88
SCFD1-216ENST00000555550 PTP4A3O75365 173 aa3.31□□□□□ -1.88
SCFD1-216ENST00000555550 MOCS3O95396 460 aa3.31□□□□□ -1.88
SCFD1-216ENST00000555550 CA6P23280 308 aa3.31□□□□□ -1.88
SCFD1-216ENST00000555550 PSMB10P40306 273 aa3.31□□□□□ -1.88
SCFD1-216ENST00000555550 MATR3P43243 847 aaKnown RBP eCLIP3.31□□□□□ -1.88
SCFD1-216ENST00000555550 TPD52P55327 224 aaPredicted RBP3.31□□□□□ -1.88
SCFD1-216ENST00000555550 TCTE1Q5JU00 501 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms