RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 RECQL5O94762 991 aaPredicted RBP17.21■□□□□ 0.35
SYNE3-202ENST00000553340 ESR1P03372 595 aa17.21■□□□□ 0.35
SYNE3-202ENST00000553340 BMP4P12644 408 aa17.21■□□□□ 0.35
SYNE3-202ENST00000553340 PFKLP17858 780 aa17.21■□□□□ 0.35
SYNE3-202ENST00000553340 GRK4P32298 578 aa17.21■□□□□ 0.35
SYNE3-202ENST00000553340 SPANXN4Q5MJ08 99 aa17.21■□□□□ 0.35
SYNE3-202ENST00000553340 DET1Q7L5Y6 550 aa17.21■□□□□ 0.35
SYNE3-202ENST00000553340 ADAMTSL2Q86TH1 951 aa17.21■□□□□ 0.35
SYNE3-202ENST00000553340 OR6Q1Q8NGQ2 317 aa17.21■□□□□ 0.35
SYNE3-202ENST00000553340 POP5Q969H6 163 aaKnown RBP17.21■□□□□ 0.35
SYNE3-202ENST00000553340 REXO5Q96IC2 774 aaKnown RBP17.21■□□□□ 0.35
SYNE3-202ENST00000553340 SMIM14Q96QK8 99 aa17.21■□□□□ 0.35
SYNE3-202ENST00000553340 TMED5Q9Y3A6 229 aa17.21■□□□□ 0.35
SYNE3-202ENST00000553340 CCL27Q9Y4X3 112 aa17.21■□□□□ 0.35
SYNE3-202ENST00000553340 PRMT5O14744 637 aaPredicted RBP17.21■□□□□ 0.35
SYNE3-202ENST00000553340 SERPINA1P01009 418 aa17.21■□□□□ 0.35
SYNE3-202ENST00000553340 GRK3P35626 688 aa17.21■□□□□ 0.35
SYNE3-202ENST00000553340 RGRP47804 291 aa17.21■□□□□ 0.35
SYNE3-202ENST00000553340 VBP1P61758 197 aa17.21■□□□□ 0.35
SYNE3-202ENST00000553340 TRAF3Q13114 568 aa17.21■□□□□ 0.35
SYNE3-202ENST00000553340 DNASE1L3Q13609 305 aa17.21■□□□□ 0.35
SYNE3-202ENST00000553340 NPTX1Q15818 432 aa17.21■□□□□ 0.35
SYNE3-202ENST00000553340 PLEKHG7Q6ZR37 379 aa17.21■□□□□ 0.35
SYNE3-202ENST00000553340 LPCAT1Q8NF37 534 aa17.21■□□□□ 0.35
SYNE3-202ENST00000553340 HPS1Q92902 700 aa17.21■□□□□ 0.35
SYNE3-202ENST00000553340 YIPF6Q96EC8 236 aa17.21■□□□□ 0.35
SYNE3-202ENST00000553340 FUBP3Q96I24 572 aaKnown RBP eCLIP17.21■□□□□ 0.35
SYNE3-202ENST00000553340 EXOC2Q96KP1 924 aa17.21■□□□□ 0.35
SYNE3-202ENST00000553340 SPC25Q9HBM1 224 aa17.21■□□□□ 0.35
SYNE3-202ENST00000553340 MTPAPQ9NVV4 582 aaKnown RBP eCLIP17.21■□□□□ 0.35
SYNE3-202ENST00000553340 SCN3BQ9NY72 215 aa17.21■□□□□ 0.35
SYNE3-202ENST00000553340 DNMT3BQ9UBC3 853 aaKnown RBP17.21■□□□□ 0.35
SYNE3-202ENST00000553340 IL1RNP18510 177 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 FSHRP23945 695 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 IGFBP5P24593 272 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 ACVR2AP27037 513 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 HOXD9P28356 352 aaPredicted RBP17.2■□□□□ 0.34
SYNE3-202ENST00000553340 ALDH4A1P30038 563 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 PTGER3P43115 390 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 KPNA1P52294 538 aaPredicted RBP17.2■□□□□ 0.34
SYNE3-202ENST00000553340 NFE2Q16621 373 aaPredicted RBP17.2■□□□□ 0.34
SYNE3-202ENST00000553340 HIST2H2ACQ16777 129 aaPredicted RBP17.2■□□□□ 0.34
SYNE3-202ENST00000553340 CACHD1Q5VU97 1274 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 ATG9BQ674R7 924 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 PHACTR4Q8IZ21 702 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 PHF10Q8WUB8 498 aaKnown RBP17.2■□□□□ 0.34
SYNE3-202ENST00000553340 FBXO32Q969P5 355 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 ASPSCR1Q9BZE9 553 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 KAT8Q9H7Z6 458 aaKnown RBP17.2■□□□□ 0.34
SYNE3-202ENST00000553340 UBA2Q9UBT2 640 aaPredicted RBP17.2■□□□□ 0.34
SYNE3-202ENST00000553340 TSR3Q9UJK0 312 aaKnown RBP17.2■□□□□ 0.34
SYNE3-202ENST00000553340 PADI3Q9ULW8 664 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 Q9Y3F1 56 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 PCDHGA10Q9Y5H3 936 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 PLXNA3P51805 1871 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 A0A0U1RQF3 1178 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 IQCF5A8MTL0 148 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 FAM220BPB1ANY3 271 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 STX7O15400 261 aaKnown RBP17.2■□□□□ 0.34
SYNE3-202ENST00000553340 PRLP01236 227 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 IGLV3-27P01718 113 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 JUNDP17535 347 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 TACR2P21452 398 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 CD52P31358 61 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 FMO3P31513 532 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 MAP2K4P45985 399 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 CLCN7P51798 805 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 HUNKP57058 714 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 MAP2K5Q13163 448 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 SMU1Q2TAY7 513 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 TAS2R42Q7RTR8 314 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 CFAP52Q8N1V2 620 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 LIX1Q8N485 282 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 CARNMT1Q8N4J0 409 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 KLHDC9Q8NEP7 349 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 OR7D4Q8NG98 312 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 DYNC2LI1Q8TCX1 351 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 PDLIM5Q96HC4 596 aaKnown RBP17.2■□□□□ 0.34
SYNE3-202ENST00000553340 OR52E6Q96RD3 313 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 PARK7Q99497 189 aaKnown RBP17.2■□□□□ 0.34
SYNE3-202ENST00000553340 HERC2P3Q9BVR0 1158 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 DUSP21Q9H596 190 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 BPIFA1Q9NP55 256 aa17.2■□□□□ 0.34
SYNE3-202ENST00000553340 RAD51BO15315 384 aa17.19■□□□□ 0.34
SYNE3-202ENST00000553340 FFAR2O15552 330 aa17.19■□□□□ 0.34
SYNE3-202ENST00000553340 ST13P50502 369 aaKnown RBP17.19■□□□□ 0.34
SYNE3-202ENST00000553340 SLC35A2P78381 396 aa17.19■□□□□ 0.34
SYNE3-202ENST00000553340 PGS1Q32NB8 556 aa17.19■□□□□ 0.34
SYNE3-202ENST00000553340 SYT6Q5T7P8 510 aaPredicted RBP17.19■□□□□ 0.34
SYNE3-202ENST00000553340 NADSYN1Q6IA69 706 aa17.19■□□□□ 0.34
SYNE3-202ENST00000553340 SHQ1Q6PI26 577 aaKnown RBP17.19■□□□□ 0.34
SYNE3-202ENST00000553340 SBSNQ6UWP8 590 aa17.19■□□□□ 0.34
SYNE3-202ENST00000553340 CCDC81Q6ZN84 652 aa17.19■□□□□ 0.34
SYNE3-202ENST00000553340 B3GNT8Q7Z7M8 397 aa17.19■□□□□ 0.34
SYNE3-202ENST00000553340 GALNT5Q7Z7M9 940 aa17.19■□□□□ 0.34
SYNE3-202ENST00000553340 NETO1Q8TDF5 533 aa17.19■□□□□ 0.34
SYNE3-202ENST00000553340 GPR152Q8TDT2 470 aa17.19■□□□□ 0.34
SYNE3-202ENST00000553340 FAM120BQ96EK7 910 aaKnown RBP17.19■□□□□ 0.34
SYNE3-202ENST00000553340 PYURFQ96I23 114 aa17.19■□□□□ 0.34
SYNE3-202ENST00000553340 ZNF300Q96RE9 604 aaPredicted RBP17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms