RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 CAPN5O15484 640 aaPredicted RBP13.73□□□□□ -0.21
PTCH1-226ENST00000553011 ZNF500O60304 480 aaPredicted RBP13.73□□□□□ -0.21
PTCH1-226ENST00000553011 RHOXF2BP0C7M4 288 aa13.73□□□□□ -0.21
PTCH1-226ENST00000553011 GPX6P59796 221 aa13.73□□□□□ -0.21
PTCH1-226ENST00000553011 CUL1Q13616 776 aa13.73□□□□□ -0.21
PTCH1-226ENST00000553011 GBX1Q14549 363 aa13.73□□□□□ -0.21
PTCH1-226ENST00000553011 RTP5Q14D33 572 aa13.73□□□□□ -0.21
PTCH1-226ENST00000553011 ACSBG2Q5FVE4 666 aa13.73□□□□□ -0.21
PTCH1-226ENST00000553011 IRGCQ6NXR0 463 aa13.73□□□□□ -0.21
PTCH1-226ENST00000553011 RAB11FIP2Q7L804 512 aa13.73□□□□□ -0.21
PTCH1-226ENST00000553011 GALNT7Q86SF2 657 aa13.73□□□□□ -0.21
PTCH1-226ENST00000553011 PLXDC1Q8IUK5 500 aa13.73□□□□□ -0.21
PTCH1-226ENST00000553011 TBC1D21Q8IYX1 336 aa13.73□□□□□ -0.21
PTCH1-226ENST00000553011 OR4E2Q8NGC2 313 aa13.73□□□□□ -0.21
PTCH1-226ENST00000553011 OR52E1Q8NGJ3 308 aa13.73□□□□□ -0.21
PTCH1-226ENST00000553011 LCN9Q8WX39 176 aa13.73□□□□□ -0.21
PTCH1-226ENST00000553011 KCNJ9Q92806 393 aa13.73□□□□□ -0.21
PTCH1-226ENST00000553011 PRR11Q96HE9 360 aaPredicted RBP13.73□□□□□ -0.21
PTCH1-226ENST00000553011 TGM7Q96PF1 710 aa13.73□□□□□ -0.21
PTCH1-226ENST00000553011 GPR21Q99679 349 aa13.73□□□□□ -0.21
PTCH1-226ENST00000553011 RHOXF2Q9BQY4 288 aa13.73□□□□□ -0.21
PTCH1-226ENST00000553011 TRIT1Q9H3H1 467 aaKnown RBP13.73□□□□□ -0.21
PTCH1-226ENST00000553011 XKR8Q9H6D3 395 aa13.73□□□□□ -0.21
PTCH1-226ENST00000553011 POLR1BQ9H9Y6 1135 aa13.73□□□□□ -0.21
PTCH1-226ENST00000553011 SMYD2Q9NRG4 433 aa13.73□□□□□ -0.21
PTCH1-226ENST00000553011 LATS2Q9NRM7 1088 aa13.73□□□□□ -0.21
PTCH1-226ENST00000553011 ZFATQ9P243 1243 aa13.73□□□□□ -0.21
PTCH1-226ENST00000553011 TDRKHQ9Y2W6 561 aaKnown RBP13.73□□□□□ -0.21
PTCH1-226ENST00000553011 LOXL2Q9Y4K0 774 aa13.73□□□□□ -0.21
PTCH1-226ENST00000553011 NFS1Q9Y697 457 aa13.73□□□□□ -0.21
PTCH1-226ENST00000553011 OR5K3A6NET4 321 aa13.72□□□□□ -0.21
PTCH1-226ENST00000553011 CXorf49A8MYA2 514 aaPredicted RBP13.72□□□□□ -0.21
PTCH1-226ENST00000553011 ESPNB1AK53 854 aa13.72□□□□□ -0.21
PTCH1-226ENST00000553011 KIF1CO43896 1103 aaKnown RBP13.72□□□□□ -0.21
PTCH1-226ENST00000553011 BRINP1O60477 761 aa13.72□□□□□ -0.21
PTCH1-226ENST00000553011 C9P02748 559 aa13.72□□□□□ -0.21
PTCH1-226ENST00000553011 CAPNS1P04632 268 aa13.72□□□□□ -0.21
PTCH1-226ENST00000553011 TPBGLP0DKB5 382 aa13.72□□□□□ -0.21
PTCH1-226ENST00000553011 ECHS1P30084 290 aa13.72□□□□□ -0.21
PTCH1-226ENST00000553011 LSSP48449 732 aa13.72□□□□□ -0.21
PTCH1-226ENST00000553011 TIAL1Q01085 375 aaKnown RBP eCLIP13.72□□□□□ -0.21
PTCH1-226ENST00000553011 TRA2AQ13595 282 aaKnown RBP eCLIP13.72□□□□□ -0.21
PTCH1-226ENST00000553011 DNTTIP2Q5QJE6 756 aaKnown RBP13.72□□□□□ -0.21
PTCH1-226ENST00000553011 KLHL35Q6PF15 583 aa13.72□□□□□ -0.21
PTCH1-226ENST00000553011 FAM92BQ6ZTR7 304 aa13.72□□□□□ -0.21
PTCH1-226ENST00000553011 C3orf62Q6ZUJ4 267 aa13.72□□□□□ -0.21
PTCH1-226ENST00000553011 ARHGAP22Q7Z5H3 698 aa13.72□□□□□ -0.21
PTCH1-226ENST00000553011 FBXO39Q8N4B4 442 aa13.72□□□□□ -0.21
PTCH1-226ENST00000553011 OR5K2Q8NHB8 316 aa13.72□□□□□ -0.21
PTCH1-226ENST00000553011 CD200R1Q8TD46 325 aa13.72□□□□□ -0.21
PTCH1-226ENST00000553011 SKA2Q8WVK7 121 aaPredicted RBP13.72□□□□□ -0.21
PTCH1-226ENST00000553011 CNTNAP3BQ96NU0 1288 aa13.72□□□□□ -0.21
PTCH1-226ENST00000553011 CNTNAP3Q9BZ76 1288 aa13.72□□□□□ -0.21
PTCH1-226ENST00000553011 SRMSQ9H3Y6 488 aa13.72□□□□□ -0.21
PTCH1-226ENST00000553011 TFB2MQ9H5Q4 396 aaKnown RBP13.72□□□□□ -0.21
PTCH1-226ENST00000553011 LRRC4CQ9HCJ2 640 aa13.72□□□□□ -0.21
PTCH1-226ENST00000553011 HRASLS2Q9NWW9 162 aa13.72□□□□□ -0.21
PTCH1-226ENST00000553011 EPHA6Q9UF33 1036 aa13.72□□□□□ -0.21
PTCH1-226ENST00000553011 PISDQ9UG56 409 aa13.72□□□□□ -0.21
PTCH1-226ENST00000553011 MTRF1LQ9UGC7 380 aaKnown RBP13.72□□□□□ -0.21
PTCH1-226ENST00000553011 CIDEBQ9UHD4 219 aa13.72□□□□□ -0.21
PTCH1-226ENST00000553011 PLAGL1Q9UM63 463 aa13.72□□□□□ -0.21
PTCH1-226ENST00000553011 ICKQ9UPZ9 632 aa13.72□□□□□ -0.21
PTCH1-226ENST00000553011 DHRS7Q9Y394 339 aa13.72□□□□□ -0.21
PTCH1-226ENST00000553011 COMMD10Q9Y6G5 202 aa13.72□□□□□ -0.21
PTCH1-226ENST00000553011 SDK2Q58EX2 2172 aa13.71□□□□□ -0.21
PTCH1-226ENST00000553011 TCRBV9S1A1TA0A576 114 aa13.71□□□□□ -0.21
PTCH1-226ENST00000553011 BTN3A3O00478 584 aa13.71□□□□□ -0.21
PTCH1-226ENST00000553011 BTN3A1O00481 513 aa13.71□□□□□ -0.21
PTCH1-226ENST00000553011 PLD2O14939 933 aa13.71□□□□□ -0.21
PTCH1-226ENST00000553011 HGSO14964 777 aaPredicted RBP13.71□□□□□ -0.21
PTCH1-226ENST00000553011 VPS26AO75436 327 aa13.71□□□□□ -0.21
PTCH1-226ENST00000553011 GSTA2P09210 222 aa13.71□□□□□ -0.21
PTCH1-226ENST00000553011 CCL4P13236 92 aa13.71□□□□□ -0.21
PTCH1-226ENST00000553011 POLR2CP19387 275 aaPredicted RBP13.71□□□□□ -0.21
PTCH1-226ENST00000553011 ITIH1P19827 911 aa13.71□□□□□ -0.21
PTCH1-226ENST00000553011 ATP5DP30049 168 aa13.71□□□□□ -0.21
PTCH1-226ENST00000553011 ETV5P41161 510 aa13.71□□□□□ -0.21
PTCH1-226ENST00000553011 BDKRB1P46663 353 aa13.71□□□□□ -0.21
PTCH1-226ENST00000553011 PGGT1BP53609 377 aa13.71□□□□□ -0.21
PTCH1-226ENST00000553011 CDKN2DP55273 166 aa13.71□□□□□ -0.21
PTCH1-226ENST00000553011 EIF3IQ13347 325 aaKnown RBP13.71□□□□□ -0.21
PTCH1-226ENST00000553011 KLHL38Q2WGJ6 581 aa13.71□□□□□ -0.21
PTCH1-226ENST00000553011 TTLL9Q3SXZ7 439 aa13.71□□□□□ -0.21
PTCH1-226ENST00000553011 UBAP2Q5T6F2 1119 aaKnown RBP13.71□□□□□ -0.21
PTCH1-226ENST00000553011 UNC5DQ6UXZ4 953 aa13.71□□□□□ -0.21
PTCH1-226ENST00000553011 STRA8Q7Z7C7 330 aa13.71□□□□□ -0.21
PTCH1-226ENST00000553011 OOSP2Q86WS3 158 aa13.71□□□□□ -0.21
PTCH1-226ENST00000553011 CPNE9Q8IYJ1 553 aa13.71□□□□□ -0.21
PTCH1-226ENST00000553011 GPATCH11Q8N954 259 aa13.71□□□□□ -0.21
PTCH1-226ENST00000553011 INPP5DQ92835 1189 aa13.71□□□□□ -0.21
PTCH1-226ENST00000553011 CMKLR1Q99788 373 aa13.71□□□□□ -0.21
PTCH1-226ENST00000553011 FAM129AQ9BZQ8 928 aa13.71□□□□□ -0.21
PTCH1-226ENST00000553011 RAB33BQ9H082 229 aa13.71□□□□□ -0.21
PTCH1-226ENST00000553011 CCDC86Q9H6F5 360 aaKnown RBP13.71□□□□□ -0.21
PTCH1-226ENST00000553011 KLHL42Q9P2K6 505 aa13.71□□□□□ -0.21
PTCH1-226ENST00000553011 POLG2Q9UHN1 485 aa13.71□□□□□ -0.21
PTCH1-226ENST00000553011 PCDHGA8Q9Y5G5 932 aa13.71□□□□□ -0.21
PTCH1-226ENST00000553011 HEATR5BQ9P2D3 2071 aa13.71□□□□□ -0.21
PTCH1-226ENST00000553011 SEC16AO15027 2179 aa13.71□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms