RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 PDFQ9HBH1 243 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 BPIFA1Q9NP55 256 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 HMG20AQ9NP66 347 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 FARSBQ9NSD9 589 aaKnown RBP5.32□□□□□ -1.56
LIMA1-212ENST00000552491 ATAD3AQ9NVI7 634 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 GIN1Q9NXP7 522 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 USE1Q9NZ43 259 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 CD274Q9NZQ7 290 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 ERVK-18Q9QC07 812 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 KLQ9UEF7 1012 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 RIMKLBQ9ULI2 386 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 GIT1Q9Y2X7 761 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 FAM32AQ9Y421 112 aaKnown RBP5.32□□□□□ -1.56
LIMA1-212ENST00000552491 PIKFYVEQ9Y2I7 2098 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 CCL15-CCL14A0A0B4J2E2 113 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 DRGXA6NNA5 263 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 ZNF99A8MXY4 864 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-212ENST00000552491 ARVCFO00192 962 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 IFRD1O00458 451 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-212ENST00000552491 PRMT5O14744 637 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-212ENST00000552491 TBC1D4O60343 1298 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 NDUFS3O75489 264 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 GMNNO75496 209 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 GABARAPO95166 117 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 NDST3O95803 873 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 EPOP01588 193 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 FTH1P02794 183 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 GSTT2P0CG29 244 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 GSTT2BP0CG30 244 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 PKMP14618 531 aaKnown RBP5.32□□□□□ -1.56
LIMA1-212ENST00000552491 HOXD9P28356 352 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-212ENST00000552491 CA5AP35218 305 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 ARL1P40616 181 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-212ENST00000552491 TPD52P55327 224 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-212ENST00000552491 RPL38P63173 70 aaKnown RBP5.32□□□□□ -1.56
LIMA1-212ENST00000552491 PHC1P78364 1004 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 PURAQ00577 322 aaKnown RBP5.32□□□□□ -1.56
LIMA1-212ENST00000552491 CYP4F3Q08477 520 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 TOP3AQ13472 1001 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-212ENST00000552491 GBX1Q14549 363 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 ZNF235Q14590 738 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 SMN1Q16637 294 aaKnown RBP5.32□□□□□ -1.56
LIMA1-212ENST00000552491 CCL15Q16663 113 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 FAM174BQ3ZCQ3 159 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 PAGE2BQ5JRK9 111 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 SPANXN4Q5MJ08 99 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 LCE2CQ5TA81 110 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 ZNF551Q7Z340 670 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-212ENST00000552491 GLT6D1Q7Z4J2 308 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 GOLGA7Q7Z5G4 137 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 PLEKHH3Q7Z736 793 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 GALNT5Q7Z7M9 940 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 MON1AQ86VX9 555 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 ZNF555Q8NEP9 628 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 OR7D4Q8NG98 312 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 NETO1Q8TDF5 533 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 FBLIM1Q8WUP2 373 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 VMP1Q96GC9 406 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 RPRD1AQ96P16 312 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-212ENST00000552491 SLX1AQ9BQ83 275 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 THUMPD3Q9BV44 507 aaKnown RBP5.32□□□□□ -1.56
LIMA1-212ENST00000552491 UGT2B28Q9BY64 529 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 SARS2Q9NP81 518 aaKnown RBP5.32□□□□□ -1.56
LIMA1-212ENST00000552491 PRDM8Q9NQV8 689 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 FKBPLQ9UIM3 349 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 ZMYM5Q9UJ78 669 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 SCML2Q9UQR0 700 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 LAMA3Q16787 3333 aa5.32□□□□□ -1.56
LIMA1-212ENST00000552491 A8MU76 341 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 CXCR6O00574 342 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 GNGT2O14610 69 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 NADKO95544 446 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-212ENST00000552491 SERPINF2P08697 491 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 CYP4B1P13584 511 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 EPHA2P29317 976 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 CD52P31358 61 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 GDF5P43026 501 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 TMED10P49755 219 aaKnown RBP5.31□□□□□ -1.56
LIMA1-212ENST00000552491 TSPY1Q01534 308 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 HMGCS1Q01581 520 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 TRAF3Q13114 568 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 MAPRE1Q15691 268 aaKnown RBP5.31□□□□□ -1.56
LIMA1-212ENST00000552491 INAQ16352 499 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 CARD16Q5EG05 197 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 PLA2G2CQ5R387 149 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 GDF6Q6KF10 455 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-212ENST00000552491 SUSD1Q6UWL2 747 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 CEP68Q76N32 757 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 MRPL10Q7Z7H8 261 aaKnown RBP5.31□□□□□ -1.56
LIMA1-212ENST00000552491 B3GNT8Q7Z7M8 397 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 SVOPLQ8N434 492 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 NKAPQ8N5F7 415 aaKnown RBP5.31□□□□□ -1.56
LIMA1-212ENST00000552491 MINDY2Q8NBR6 621 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 PIK3C3Q8NEB9 887 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 OR8J3Q8NGG0 315 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 CLHC1Q8NHS4 586 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 MCOLN3Q8TDD5 553 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 SLC13A3Q8WWT9 602 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 HPS1Q92902 700 aa5.31□□□□□ -1.56
LIMA1-212ENST00000552491 UBE2FQ969M7 185 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms