RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 FAM234BA2RU67 622 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 TLR5O60602 858 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 SCELO95171 688 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 UROSP10746 265 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 HMGCS1Q01581 520 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 GALNT6Q8NCL4 622 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 TMEM203Q969S6 136 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 ACAT2Q9BWD1 397 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 YJEFN3A6XGL0 299 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 RPLP2P05387 115 aaKnown RBP14□□□□□ -0.17
LIMS1-215ENST00000544547 TBX4P57082 545 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 PRAMEF19Q5SWL8 479 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 RETSATQ6NUM9 610 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 TUBA3EQ6PEY2 450 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 CYS1Q717R9 158 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 BTLAQ7Z6A9 289 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 PIH1D2Q8WWB5 315 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 GTPBP3Q969Y2 492 aaKnown RBP14□□□□□ -0.17
LIMS1-215ENST00000544547 Q96MT0 163 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 DUSP16Q9BY84 665 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 CAPN10Q9HC96 672 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 COMMD3Q9UBI1 195 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 RABL2AQ9UBK7 228 aaPredicted RBP14□□□□□ -0.17
LIMS1-215ENST00000544547 USP22Q9UPT9 525 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 SSNA1O43805 119 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 FABP3P05413 133 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 CYP3A5P20815 502 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 SLC9A3P48764 834 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 CASP9P55211 416 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 PON2Q15165 354 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 TSTD2Q5T7W7 516 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 LCN8Q6JVE9 175 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP14□□□□□ -0.17
LIMS1-215ENST00000544547 HFE2Q6ZVN8 426 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 SPNS2Q8IVW8 549 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 SLC30A2Q9BRI3 323 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 B3GNT3Q9Y2A9 372 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 PCDHB5Q9Y5E4 795 aa14□□□□□ -0.17
LIMS1-215ENST00000544547 DNMT3AQ9Y6K1 912 aaPredicted RBP14□□□□□ -0.17
LIMS1-215ENST00000544547 MYO9BQ13459 2157 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 ITGB1P05556 798 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 CHRNB1P11230 501 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 G6PDP11413 515 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 MAPK1P28482 360 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 POLR2IP36954 125 aaKnown RBP13.99□□□□□ -0.17
LIMS1-215ENST00000544547 RFX3P48380 749 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 ERVK-8P63133 956 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 CYBRD1Q53TN4 286 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 FAM171A1Q5VUB5 890 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 C9orf57Q5W0N0 161 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 PAQR3Q6TCH7 311 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 CYP20A1Q6UW02 462 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 ZNF534Q76KX8 674 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 EPHX4Q8IUS5 362 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 OR13F1Q8NGS4 319 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 PDLIM7Q9NR12 457 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 ENPP5Q9UJA9 477 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 DNAJC15Q9Y5T4 150 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 DDX60LQ5H9U9 1706 aaKnown RBP13.99□□□□□ -0.17
LIMS1-215ENST00000544547 DDX60Q8IY21 1712 aaKnown RBP13.99□□□□□ -0.17
LIMS1-215ENST00000544547 ZCWPW2A0A1B0GU75 182 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 CENPBD1B2RD01 187 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 PPP6CO00743 305 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 SUV39H1O43463 412 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 CDK14O94921 469 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 KCNA5P22460 613 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 BTBD16Q32M84 506 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 ENPP6Q6UWR7 440 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 PHF10Q8WUB8 498 aaKnown RBP13.99□□□□□ -0.17
LIMS1-215ENST00000544547 ZFP42Q96MM3 310 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 BARD1Q99728 777 aaKnown RBP13.99□□□□□ -0.17
LIMS1-215ENST00000544547 FBXO44Q9H4M3 255 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 IPPKQ9H8X2 491 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 MEAF6Q9HAF1 191 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 CLEC4AQ9UMR7 237 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 GSTK1Q9Y2Q3 226 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 MYO10Q9HD67 2058 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 FAM220BPB1ANY3 271 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 CASKO14936 926 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 ERN1O75460 977 aaKnown RBP13.99□□□□□ -0.17
LIMS1-215ENST00000544547 STAU1O95793 577 aaKnown RBP13.99□□□□□ -0.17
LIMS1-215ENST00000544547 PRKCGP05129 697 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 CYP2C18P33260 490 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 HSPA7P48741 367 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 SNAPC1Q16533 368 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 ZNF678Q5SXM1 525 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 RETREG3Q86VR2 466 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 MYLPFQ96A32 169 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 TMEM209Q96SK2 561 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 ATP13A1Q9HD20 1204 aa13.99□□□□□ -0.17
LIMS1-215ENST00000544547 TLR8Q9NR97 1041 aaKnown RBP13.99□□□□□ -0.17
LIMS1-215ENST00000544547 FAM72CH0Y354 149 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 TSPAN1O60635 241 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 HOXB8P17481 243 aaPredicted RBP13.98□□□□□ -0.17
LIMS1-215ENST00000544547 CLDN10P78369 228 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 PTPRCAPQ14761 206 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 FAM72AQ5TYM5 149 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 PDE12Q6L8Q7 609 aaKnown RBP13.98□□□□□ -0.17
LIMS1-215ENST00000544547 FAM72DQ6L9T8 149 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 FAM72BQ86X60 149 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms