RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 FBXO8Q9NRD0 319 aa13.47□□□□□ -0.25
VPS33A-208ENST00000543633 TRPS1Q9UHF7 1281 aa13.47□□□□□ -0.25
VPS33A-208ENST00000543633 MAN2B2Q9Y2E5 1009 aa13.47□□□□□ -0.25
VPS33A-208ENST00000543633 ZNF106Q9H2Y7 1883 aaKnown RBP13.47□□□□□ -0.25
VPS33A-208ENST00000543633 RPS3P23396 243 aaKnown RBP eCLIP13.47□□□□□ -0.25
VPS33A-208ENST00000543633 ACVR2AP27037 513 aa13.47□□□□□ -0.25
VPS33A-208ENST00000543633 IDUAP35475 653 aa13.47□□□□□ -0.25
VPS33A-208ENST00000543633 SOX11P35716 441 aa13.47□□□□□ -0.25
VPS33A-208ENST00000543633 MAGEA2P43356 314 aa13.47□□□□□ -0.25
VPS33A-208ENST00000543633 NKX3-2P78367 333 aa13.47□□□□□ -0.25
VPS33A-208ENST00000543633 MVKQ03426 396 aa13.47□□□□□ -0.25
VPS33A-208ENST00000543633 CACNG1Q06432 222 aa13.47□□□□□ -0.25
VPS33A-208ENST00000543633 ITGADQ13349 1161 aa13.47□□□□□ -0.25
VPS33A-208ENST00000543633 KEAP1Q14145 624 aa13.47□□□□□ -0.25
VPS33A-208ENST00000543633 RFTN2Q52LD8 501 aaPredicted RBP13.47□□□□□ -0.25
VPS33A-208ENST00000543633 LRIF1Q5T3J3 769 aa13.47□□□□□ -0.25
VPS33A-208ENST00000543633 TRIM46Q7Z4K8 759 aa13.47□□□□□ -0.25
VPS33A-208ENST00000543633 MILR1Q7Z6M3 343 aa13.47□□□□□ -0.25
VPS33A-208ENST00000543633 RBM23Q86U06 439 aaKnown RBP13.47□□□□□ -0.25
VPS33A-208ENST00000543633 ARL10Q8N8L6 244 aa13.47□□□□□ -0.25
VPS33A-208ENST00000543633 TRPV1Q8NER1 839 aa13.47□□□□□ -0.25
VPS33A-208ENST00000543633 TRIB2Q92519 343 aa13.47□□□□□ -0.25
VPS33A-208ENST00000543633 ALPK1Q96QP1 1244 aa13.47□□□□□ -0.25
VPS33A-208ENST00000543633 SLC29A3Q9BZD2 475 aa13.47□□□□□ -0.25
VPS33A-208ENST00000543633 OARD1Q9Y530 152 aa13.47□□□□□ -0.25
VPS33A-208ENST00000543633 MAGED1Q9Y5V3 778 aaPredicted RBP13.47□□□□□ -0.25
VPS33A-208ENST00000543633 ILVBLA1L0T0 632 aa13.46□□□□□ -0.25
VPS33A-208ENST00000543633 MYADML2A6NDP7 307 aa13.46□□□□□ -0.25
VPS33A-208ENST00000543633 PRMT5O14744 637 aaPredicted RBP13.46□□□□□ -0.25
VPS33A-208ENST00000543633 BCKDKO14874 412 aa13.46□□□□□ -0.25
VPS33A-208ENST00000543633 FFAR2O15552 330 aa13.46□□□□□ -0.25
VPS33A-208ENST00000543633 OR1I1O60431 355 aa13.46□□□□□ -0.25
VPS33A-208ENST00000543633 ACSL4O60488 711 aa13.46□□□□□ -0.25
VPS33A-208ENST00000543633 PRKD3O94806 890 aa13.46□□□□□ -0.25
VPS33A-208ENST00000543633 GRK4P32298 578 aa13.46□□□□□ -0.25
VPS33A-208ENST00000543633 RGRP47804 291 aa13.46□□□□□ -0.25
VPS33A-208ENST00000543633 FLT3LGP49771 235 aa13.46□□□□□ -0.25
VPS33A-208ENST00000543633 RGS4P49798 205 aa13.46□□□□□ -0.25
VPS33A-208ENST00000543633 CDKN1CP49918 316 aaPredicted RBP13.46□□□□□ -0.25
VPS33A-208ENST00000543633 MAPK10P53779 464 aa13.46□□□□□ -0.25
VPS33A-208ENST00000543633 RPL38P63173 70 aaKnown RBP13.46□□□□□ -0.25
VPS33A-208ENST00000543633 ABRAXAS2Q15018 415 aa13.46□□□□□ -0.25
VPS33A-208ENST00000543633 PON2Q15165 354 aa13.46□□□□□ -0.25
VPS33A-208ENST00000543633 ZRANB3Q5FWF4 1079 aa13.46□□□□□ -0.25
VPS33A-208ENST00000543633 TTC23LQ6PF05 361 aa13.46□□□□□ -0.25
VPS33A-208ENST00000543633 GLB1LQ6UWU2 654 aa13.46□□□□□ -0.25
VPS33A-208ENST00000543633 DCP2Q8IU60 420 aaKnown RBP13.46□□□□□ -0.25
VPS33A-208ENST00000543633 MSRB3Q8IXL7 192 aa13.46□□□□□ -0.25
VPS33A-208ENST00000543633 LPCAT1Q8NF37 534 aa13.46□□□□□ -0.25
VPS33A-208ENST00000543633 OR10A6Q8NH74 314 aa13.46□□□□□ -0.25
VPS33A-208ENST00000543633 CDK15Q96Q40 435 aa13.46□□□□□ -0.25
VPS33A-208ENST00000543633 CPPED1Q9BRF8 314 aaPredicted RBP13.46□□□□□ -0.25
VPS33A-208ENST00000543633 THUMPD3Q9BV44 507 aaKnown RBP13.46□□□□□ -0.25
VPS33A-208ENST00000543633 IPPKQ9H8X2 491 aa13.46□□□□□ -0.25
VPS33A-208ENST00000543633 CCNB1IP1Q9NPC3 277 aa13.46□□□□□ -0.25
VPS33A-208ENST00000543633 TRNAU1APQ9NX07 287 aaKnown RBP13.46□□□□□ -0.25
VPS33A-208ENST00000543633 DAPK2Q9UIK4 370 aa13.46□□□□□ -0.25
VPS33A-208ENST00000543633 TMEFF2Q9UIK5 374 aaPredicted RBP13.46□□□□□ -0.25
VPS33A-208ENST00000543633 AGO1Q9UL18 857 aaKnown RBP13.46□□□□□ -0.25
VPS33A-208ENST00000543633 RAI2Q9Y5P3 530 aa13.46□□□□□ -0.25
VPS33A-208ENST00000543633 DNAH12Q6ZR08 3092 aa13.46□□□□□ -0.25
VPS33A-208ENST00000543633 ANKRD66B4E2M5 251 aa13.46□□□□□ -0.26
VPS33A-208ENST00000543633 F8W810 466 aa13.46□□□□□ -0.26
VPS33A-208ENST00000543633 HS6ST1O60243 411 aa13.46□□□□□ -0.26
VPS33A-208ENST00000543633 CLDN11O75508 207 aa13.46□□□□□ -0.26
VPS33A-208ENST00000543633 CREG1O75629 220 aa13.46□□□□□ -0.26
VPS33A-208ENST00000543633 TBX18O95935 607 aa13.46□□□□□ -0.26
VPS33A-208ENST00000543633 F11P03951 625 aa13.46□□□□□ -0.26
VPS33A-208ENST00000543633 PGRP06401 933 aa13.46□□□□□ -0.26
VPS33A-208ENST00000543633 HMBSP08397 361 aa13.46□□□□□ -0.26
VPS33A-208ENST00000543633 SLC2A4P14672 509 aa13.46□□□□□ -0.26
VPS33A-208ENST00000543633 THPOP40225 353 aa13.46□□□□□ -0.26
VPS33A-208ENST00000543633 GNPDA1P46926 289 aa13.46□□□□□ -0.26
VPS33A-208ENST00000543633 PRKCZQ05513 592 aa13.46□□□□□ -0.26
VPS33A-208ENST00000543633 SMARCB1Q12824 385 aa13.46□□□□□ -0.26
VPS33A-208ENST00000543633 TAF10Q12962 218 aa13.46□□□□□ -0.26
VPS33A-208ENST00000543633 DGUOKQ16854 277 aa13.46□□□□□ -0.26
VPS33A-208ENST00000543633 FAM26DQ5JW98 314 aa13.46□□□□□ -0.26
VPS33A-208ENST00000543633 SHQ1Q6PI26 577 aaKnown RBP13.46□□□□□ -0.26
VPS33A-208ENST00000543633 MSANTD1Q6ZTZ1 278 aa13.46□□□□□ -0.26
VPS33A-208ENST00000543633 CHST9Q7L1S5 443 aa13.46□□□□□ -0.26
VPS33A-208ENST00000543633 PRSS48Q7RTY5 328 aa13.46□□□□□ -0.26
VPS33A-208ENST00000543633 ELMOD1Q8N336 334 aa13.46□□□□□ -0.26
VPS33A-208ENST00000543633 SVOPQ8N4V2 548 aa13.46□□□□□ -0.26
VPS33A-208ENST00000543633 KLHDC9Q8NEP7 349 aa13.46□□□□□ -0.26
VPS33A-208ENST00000543633 OR7D4Q8NG98 312 aa13.46□□□□□ -0.26
VPS33A-208ENST00000543633 PHF10Q8WUB8 498 aaKnown RBP13.46□□□□□ -0.26
VPS33A-208ENST00000543633 FAR1Q8WVX9 515 aa13.46□□□□□ -0.26
VPS33A-208ENST00000543633 ESAMQ96AP7 390 aa13.46□□□□□ -0.26
VPS33A-208ENST00000543633 TAMM41Q96BW9 452 aa13.46□□□□□ -0.26
VPS33A-208ENST00000543633 MYEOVQ96EZ4 313 aa13.46□□□□□ -0.26
VPS33A-208ENST00000543633 FAM126AQ9BYI3 521 aaPredicted RBP13.46□□□□□ -0.26
VPS33A-208ENST00000543633 KAT8Q9H7Z6 458 aaKnown RBP13.46□□□□□ -0.26
VPS33A-208ENST00000543633 SLC25A37Q9NYZ2 338 aa13.46□□□□□ -0.26
VPS33A-208ENST00000543633 HECAQ9UBI9 543 aaPredicted RBP13.46□□□□□ -0.26
VPS33A-208ENST00000543633 MTRRQ9UBK8 725 aa13.46□□□□□ -0.26
VPS33A-208ENST00000543633 DOLKQ9UPQ8 538 aa13.46□□□□□ -0.26
VPS33A-208ENST00000543633 INVSQ9Y283 1065 aa13.46□□□□□ -0.26
VPS33A-208ENST00000543633 TPRKBQ9Y3C4 175 aa13.46□□□□□ -0.26
VPS33A-208ENST00000543633 CASP8AP2Q9UKL3 1982 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms