RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 OR2Y1Q8NGV0 311 aa17.22■□□□□ 0.35
CLSTN3-214ENST00000542663 MARVELD3Q96A59 401 aa17.22■□□□□ 0.35
CLSTN3-214ENST00000542663 RBM41Q96IZ5 413 aaKnown RBP17.22■□□□□ 0.35
CLSTN3-214ENST00000542663 GBP4Q96PP9 640 aa17.22■□□□□ 0.35
CLSTN3-214ENST00000542663 GORASP1Q9BQQ3 440 aa17.22■□□□□ 0.35
CLSTN3-214ENST00000542663 SPRTNQ9H040 489 aaPredicted RBP17.22■□□□□ 0.35
CLSTN3-214ENST00000542663 DEF6Q9H4E7 631 aa17.22■□□□□ 0.35
CLSTN3-214ENST00000542663 XKR8Q9H6D3 395 aa17.22■□□□□ 0.35
CLSTN3-214ENST00000542663 COG4Q9H9E3 785 aa17.22■□□□□ 0.35
CLSTN3-214ENST00000542663 ACTR10Q9NZ32 417 aa17.22■□□□□ 0.35
CLSTN3-214ENST00000542663 KLHL8Q9P2G9 620 aaPredicted RBP17.22■□□□□ 0.35
CLSTN3-214ENST00000542663 C17orf113A0A1B0GUU1 675 aa17.21■□□□□ 0.35
CLSTN3-214ENST00000542663 CCDC66A2RUB6 948 aa17.21■□□□□ 0.35
CLSTN3-214ENST00000542663 C2orf74A8MZ97 194 aa17.21■□□□□ 0.35
CLSTN3-214ENST00000542663 PEX12O00623 359 aa17.21■□□□□ 0.35
CLSTN3-214ENST00000542663 LRRTM2O43300 516 aa17.21■□□□□ 0.35
CLSTN3-214ENST00000542663 MAP3K7O43318 606 aa17.21■□□□□ 0.35
CLSTN3-214ENST00000542663 OR2B3O76000 313 aa17.21■□□□□ 0.35
CLSTN3-214ENST00000542663 IPO13O94829 963 aaKnown RBP17.21■□□□□ 0.35
CLSTN3-214ENST00000542663 MBD3O95983 291 aa17.21■□□□□ 0.35
CLSTN3-214ENST00000542663 AGTP01019 485 aa17.21■□□□□ 0.35
CLSTN3-214ENST00000542663 ATXN8OSP0DMR3 200 aa17.21■□□□□ 0.35
CLSTN3-214ENST00000542663 PDHA2P29803 388 aa17.21■□□□□ 0.35
CLSTN3-214ENST00000542663 ARHGAP25P42331 645 aa17.21■□□□□ 0.35
CLSTN3-214ENST00000542663 SLC9A5Q14940 896 aa17.21■□□□□ 0.35
CLSTN3-214ENST00000542663 TAF1AQ15573 450 aaPredicted RBP17.21■□□□□ 0.35
CLSTN3-214ENST00000542663 ZIC1Q15915 447 aa17.21■□□□□ 0.35
CLSTN3-214ENST00000542663 SPESP1Q6UW49 350 aa17.21■□□□□ 0.35
CLSTN3-214ENST00000542663 PID1Q7Z2X4 250 aa17.21■□□□□ 0.35
CLSTN3-214ENST00000542663 TRIM73Q86UV7 250 aa17.21■□□□□ 0.35
CLSTN3-214ENST00000542663 ZC3H18Q86VM9 953 aaKnown RBP17.21■□□□□ 0.35
CLSTN3-214ENST00000542663 AMIGO1Q86WK6 493 aa17.21■□□□□ 0.35
CLSTN3-214ENST00000542663 C19orf47Q8N9M1 422 aaKnown RBP17.21■□□□□ 0.35
CLSTN3-214ENST00000542663 TM9SF4Q92544 642 aa17.21■□□□□ 0.35
CLSTN3-214ENST00000542663 IQCDQ96DY2 449 aa17.21■□□□□ 0.35
CLSTN3-214ENST00000542663 C17orf62Q9BQA9 187 aa17.21■□□□□ 0.35
CLSTN3-214ENST00000542663 DHCR7Q9UBM7 475 aaKnown RBP17.21■□□□□ 0.35
CLSTN3-214ENST00000542663 GPN3Q9UHW5 284 aaPredicted RBP17.21■□□□□ 0.35
CLSTN3-214ENST00000542663 NOVA2Q9UNW9 492 aaKnown RBP17.21■□□□□ 0.35
CLSTN3-214ENST00000542663 HYOU1Q9Y4L1 999 aa17.21■□□□□ 0.35
CLSTN3-214ENST00000542663 MYO7BQ6PIF6 2116 aa17.2■□□□□ 0.34
CLSTN3-214ENST00000542663 CELSR1Q9NYQ6 3014 aa17.2■□□□□ 0.34
CLSTN3-214ENST00000542663 HNRNPRO43390 633 aaKnown RBP17.2■□□□□ 0.34
CLSTN3-214ENST00000542663 KLHL41O60662 606 aa17.2■□□□□ 0.34
CLSTN3-214ENST00000542663 CST8O60676 142 aa17.2■□□□□ 0.34
CLSTN3-214ENST00000542663 IGHEP01854 428 aa17.2■□□□□ 0.34
CLSTN3-214ENST00000542663 DCDP81605 110 aaKnown RBP17.2■□□□□ 0.34
CLSTN3-214ENST00000542663 MSLNQ13421 630 aaPredicted RBP17.2■□□□□ 0.34
CLSTN3-214ENST00000542663 OLIG2Q13516 323 aa17.2■□□□□ 0.34
CLSTN3-214ENST00000542663 BOP1Q14137 746 aaKnown RBP17.2■□□□□ 0.34
CLSTN3-214ENST00000542663 ZRSR2Q15696 482 aaKnown RBP17.2■□□□□ 0.34
CLSTN3-214ENST00000542663 HIF1AQ16665 826 aa17.2■□□□□ 0.34
CLSTN3-214ENST00000542663 SARM1Q6SZW1 724 aa17.2■□□□□ 0.34
CLSTN3-214ENST00000542663 MICALCLQ6ZW33 695 aa17.2■□□□□ 0.34
CLSTN3-214ENST00000542663 BZW1Q7L1Q6 419 aaKnown RBP17.2■□□□□ 0.34
CLSTN3-214ENST00000542663 NXPE1Q8N323 547 aa17.2■□□□□ 0.34
CLSTN3-214ENST00000542663 FLVCR1-AS1Q8TAF5 88 aa17.2■□□□□ 0.34
CLSTN3-214ENST00000542663 PROKR1Q8TCW9 393 aa17.2■□□□□ 0.34
CLSTN3-214ENST00000542663 PTERQ96BW5 349 aa17.2■□□□□ 0.34
CLSTN3-214ENST00000542663 VAT1Q99536 393 aa17.2■□□□□ 0.34
CLSTN3-214ENST00000542663 WDR77Q9BQA1 342 aaPredicted RBP17.2■□□□□ 0.34
CLSTN3-214ENST00000542663 HGH1Q9BTY7 390 aa17.2■□□□□ 0.34
CLSTN3-214ENST00000542663 FSD1LQ9BXM9 530 aa17.2■□□□□ 0.34
CLSTN3-214ENST00000542663 FAM96AQ9H5X1 160 aa17.2■□□□□ 0.34
CLSTN3-214ENST00000542663 AGPAT4Q9NRZ5 378 aa17.2■□□□□ 0.34
CLSTN3-214ENST00000542663 DDX56Q9NY93 547 aaKnown RBP17.2■□□□□ 0.34
CLSTN3-214ENST00000542663 ICKQ9UPZ9 632 aa17.2■□□□□ 0.34
CLSTN3-214ENST00000542663 ENTPD4Q9Y227 616 aa17.2■□□□□ 0.34
CLSTN3-214ENST00000542663 AP1M2Q9Y6Q5 423 aa17.2■□□□□ 0.34
CLSTN3-214ENST00000542663 CPAMD8Q8IZJ3 1885 aa17.19■□□□□ 0.34
CLSTN3-214ENST00000542663 ARHGAP10A1A4S6 786 aa17.19■□□□□ 0.34
CLSTN3-214ENST00000542663 TNNT1P13805 278 aa17.19■□□□□ 0.34
CLSTN3-214ENST00000542663 ATP1B2P14415 290 aaPredicted RBP17.19■□□□□ 0.34
CLSTN3-214ENST00000542663 CD151P48509 253 aa17.19■□□□□ 0.34
CLSTN3-214ENST00000542663 UBASH3AP57075 661 aa17.19■□□□□ 0.34
CLSTN3-214ENST00000542663 PRKG2Q13237 762 aa17.19■□□□□ 0.34
CLSTN3-214ENST00000542663 TFDP2Q14188 446 aa17.19■□□□□ 0.34
CLSTN3-214ENST00000542663 OR13C4Q8NGS5 318 aa17.19■□□□□ 0.34
CLSTN3-214ENST00000542663 GRHL3Q8TE85 626 aa17.19■□□□□ 0.34
CLSTN3-214ENST00000542663 DCUN1D1Q96GG9 259 aa17.19■□□□□ 0.34
CLSTN3-214ENST00000542663 PHF12Q96QT6 1004 aa17.19■□□□□ 0.34
CLSTN3-214ENST00000542663 OR2A14Q96R47 310 aa17.19■□□□□ 0.34
CLSTN3-214ENST00000542663 FICDQ9BVA6 458 aa17.19■□□□□ 0.34
CLSTN3-214ENST00000542663 UNKQ9C0B0 810 aaKnown RBP17.19■□□□□ 0.34
CLSTN3-214ENST00000542663 MVB12BQ9H7P6 319 aa17.19■□□□□ 0.34
CLSTN3-214ENST00000542663 ATP13A2Q9NQ11 1180 aa17.19■□□□□ 0.34
CLSTN3-214ENST00000542663 IFT80Q9P2H3 777 aaPredicted RBP17.19■□□□□ 0.34
CLSTN3-214ENST00000542663 NDOR1Q9UHB4 597 aa17.19■□□□□ 0.34
CLSTN3-214ENST00000542663 RSPH14Q9UHP6 348 aa17.19■□□□□ 0.34
CLSTN3-214ENST00000542663 CRLS1Q9UJA2 301 aa17.19■□□□□ 0.34
CLSTN3-214ENST00000542663 SRPK3Q9UPE1 567 aa17.19■□□□□ 0.34
CLSTN3-214ENST00000542663 OSGIN2Q9Y236 505 aa17.19■□□□□ 0.34
CLSTN3-214ENST00000542663 ADGRG4Q8IZF6 3080 aa17.19■□□□□ 0.34
CLSTN3-214ENST00000542663 IGLV3-16A0A075B6K0 115 aa17.18■□□□□ 0.34
CLSTN3-214ENST00000542663 C2orf81A6NN90 581 aa17.18■□□□□ 0.34
CLSTN3-214ENST00000542663 AGPSO00116 658 aa17.18■□□□□ 0.34
CLSTN3-214ENST00000542663 ZG16O60844 167 aa17.18■□□□□ 0.34
CLSTN3-214ENST00000542663 ALOX12BO75342 701 aa17.18■□□□□ 0.34
CLSTN3-214ENST00000542663 CD63P08962 238 aa17.18■□□□□ 0.34
CLSTN3-214ENST00000542663 RALBP11234 206 aa17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms