RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 UBXN10Q96LJ8 280 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 LDHAL6BQ9BYZ2 381 aaPredicted RBP16.7■□□□□ 0.26
LIG1-204ENST00000542460 TRIT1Q9H3H1 467 aaKnown RBP16.7■□□□□ 0.26
LIG1-204ENST00000542460 EURLQ9NYK6 297 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 CAMSAP3Q9P1Y5 1249 aaPredicted RBP16.7■□□□□ 0.26
LIG1-204ENST00000542460 CTNNAL1Q9UBT7 734 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 CDV3Q9UKY7 258 aaKnown RBP16.7■□□□□ 0.26
LIG1-204ENST00000542460 ACOT9Q9Y305 439 aa16.7■□□□□ 0.26
LIG1-204ENST00000542460 RHPN2P1A8MT19 583 aa16.69■□□□□ 0.26
LIG1-204ENST00000542460 TM4SF5O14894 197 aa16.69■□□□□ 0.26
LIG1-204ENST00000542460 TNFSF14O43557 240 aa16.69■□□□□ 0.26
LIG1-204ENST00000542460 C2P06681 752 aa16.69■□□□□ 0.26
LIG1-204ENST00000542460 SLC35E2BP0CK96 405 aa16.69■□□□□ 0.26
LIG1-204ENST00000542460 CCDC166P0CW27 439 aa16.69■□□□□ 0.26
LIG1-204ENST00000542460 PNLIPP16233 465 aa16.69■□□□□ 0.26
LIG1-204ENST00000542460 CSRP1P21291 193 aaKnown RBP16.69■□□□□ 0.26
LIG1-204ENST00000542460 SDHBP21912 280 aa16.69■□□□□ 0.26
LIG1-204ENST00000542460 MAGEA12P43365 314 aa16.69■□□□□ 0.26
LIG1-204ENST00000542460 PUM1Q14671 1186 aaKnown RBP eCLIP16.69■□□□□ 0.267e-8■□□□□ 9.8
LIG1-204ENST00000542460 TAF1BQ53T94 588 aaPredicted RBP16.69■□□□□ 0.26
LIG1-204ENST00000542460 DUS1LQ6P1R4 473 aaKnown RBP16.69■□□□□ 0.26
LIG1-204ENST00000542460 FBXO38Q6PIJ6 1188 aa16.69■□□□□ 0.26
LIG1-204ENST00000542460 ERMP1Q7Z2K6 904 aa16.69■□□□□ 0.26
LIG1-204ENST00000542460 PIWIL4Q7Z3Z4 852 aaKnown RBP16.69■□□□□ 0.26
LIG1-204ENST00000542460 OR5K2Q8NHB8 316 aa16.69■□□□□ 0.26
LIG1-204ENST00000542460 ANKRD49Q8WVL7 239 aa16.69■□□□□ 0.26
LIG1-204ENST00000542460 ASB11Q8WXH4 323 aa16.69■□□□□ 0.26
LIG1-204ENST00000542460 ANKRD7Q92527 254 aa16.69■□□□□ 0.26
LIG1-204ENST00000542460 UCK1Q9HA47 277 aa16.69■□□□□ 0.26
LIG1-204ENST00000542460 POLG2Q9UHN1 485 aa16.69■□□□□ 0.26
LIG1-204ENST00000542460 RNF215Q9Y6U7 377 aa16.69■□□□□ 0.26
LIG1-204ENST00000542460 CEP250Q9BV73 2442 aa16.68■□□□□ 0.26
LIG1-204ENST00000542460 A0A087X1B8 175 aa16.68■□□□□ 0.26
LIG1-204ENST00000542460 A0A096LPK6 155 aa16.68■□□□□ 0.26
LIG1-204ENST00000542460 PRAMEF33A0A0G2JMD5 474 aa16.68■□□□□ 0.26
LIG1-204ENST00000542460 CPED1A4D0V7 1026 aa16.68■□□□□ 0.26
LIG1-204ENST00000542460 PSIP1O75475 530 aaKnown RBP16.68■□□□□ 0.26
LIG1-204ENST00000542460 MPOP05164 745 aa16.68■□□□□ 0.26
LIG1-204ENST00000542460 ACP1P24666 158 aa16.68■□□□□ 0.26
LIG1-204ENST00000542460 CCNFP41002 786 aa16.68■□□□□ 0.26
LIG1-204ENST00000542460 ZNF844Q08AG5 666 aa16.68■□□□□ 0.26
LIG1-204ENST00000542460 CASP8Q14790 479 aa16.68■□□□□ 0.26
LIG1-204ENST00000542460 TRIP6Q15654 476 aaKnown RBP16.68■□□□□ 0.26
LIG1-204ENST00000542460 GUSBP11Q6P575 273 aa16.68■□□□□ 0.26
LIG1-204ENST00000542460 TTC23LQ6PF05 361 aa16.68■□□□□ 0.26
LIG1-204ENST00000542460 LRIG3Q6UXM1 1119 aa16.68■□□□□ 0.26
LIG1-204ENST00000542460 DGLUCYQ7Z3D6 616 aa16.68■□□□□ 0.26
LIG1-204ENST00000542460 ZNF438Q7Z4V0 828 aa16.68■□□□□ 0.26
LIG1-204ENST00000542460 CROCCP2Q86T23 111 aa16.68■□□□□ 0.26
LIG1-204ENST00000542460 TBC1D1Q86TI0 1168 aaPredicted RBP16.68■□□□□ 0.26
LIG1-204ENST00000542460 OR5AR1Q8NGP9 310 aa16.68■□□□□ 0.26
LIG1-204ENST00000542460 MAGEC3Q8TD91 643 aa16.68■□□□□ 0.26
LIG1-204ENST00000542460 ZIM3Q96PE6 472 aa16.68■□□□□ 0.26
LIG1-204ENST00000542460 DERL2Q9GZP9 239 aa16.68■□□□□ 0.26
LIG1-204ENST00000542460 KIR3DX1Q9H7L2 352 aa16.68■□□□□ 0.26
LIG1-204ENST00000542460 RUVBL2Q9Y230 463 aaKnown RBP16.68■□□□□ 0.26
LIG1-204ENST00000542460 GFYI3L273 518 aa16.67■□□□□ 0.26
LIG1-204ENST00000542460 ZW10O43264 779 aa16.67■□□□□ 0.26
LIG1-204ENST00000542460 ZBTB14O43829 449 aa16.67■□□□□ 0.26
LIG1-204ENST00000542460 RFPL1O75677 317 aa16.67■□□□□ 0.26
LIG1-204ENST00000542460 C1orf105O95561 183 aa16.67■□□□□ 0.26
LIG1-204ENST00000542460 CATP04040 527 aaKnown RBP16.67■□□□□ 0.26
LIG1-204ENST00000542460 C8GP07360 202 aa16.67■□□□□ 0.26
LIG1-204ENST00000542460 KRT15P19012 456 aa16.67■□□□□ 0.26
LIG1-204ENST00000542460 GPR3P46089 330 aa16.67■□□□□ 0.26
LIG1-204ENST00000542460 FOXK2Q01167 660 aa16.67■□□□□ 0.26
LIG1-204ENST00000542460 PRKG2Q13237 762 aa16.67■□□□□ 0.26
LIG1-204ENST00000542460 GPR18Q14330 331 aa16.67■□□□□ 0.26
LIG1-204ENST00000542460 PPM1JQ5JR12 505 aa16.67■□□□□ 0.26
LIG1-204ENST00000542460 TMEM26Q6ZUK4 368 aa16.67■□□□□ 0.26
LIG1-204ENST00000542460 EFL1Q7Z2Z2 1120 aaKnown RBP16.67■□□□□ 0.26
LIG1-204ENST00000542460 DCUN1D3Q8IWE4 304 aa16.67■□□□□ 0.26
LIG1-204ENST00000542460 DEFB124Q8NES8 71 aa16.67■□□□□ 0.26
LIG1-204ENST00000542460 MZB1Q8WU39 189 aa16.67■□□□□ 0.26
LIG1-204ENST00000542460 CABS1Q96KC9 395 aa16.67■□□□□ 0.26
LIG1-204ENST00000542460 SLC38A3Q99624 504 aa16.67■□□□□ 0.26
LIG1-204ENST00000542460 DLL3Q9NYJ7 618 aa16.67■□□□□ 0.26
LIG1-204ENST00000542460 LGALS13Q9UHV8 139 aa16.67■□□□□ 0.26
LIG1-204ENST00000542460 ASCC3Q8N3C0 2202 aaKnown RBP16.67■□□□□ 0.26
LIG1-204ENST00000542460 ARID1BQ8NFD5 2236 aaPredicted RBP16.67■□□□□ 0.26
LIG1-204ENST00000542460 ZFC3H1O60293 1989 aaKnown RBP16.67■□□□□ 0.26
LIG1-204ENST00000542460 COL5A1P20908 1838 aaPredicted RBP16.66■□□□□ 0.26
LIG1-204ENST00000542460 SLC16A5O15375 505 aa16.66■□□□□ 0.26
LIG1-204ENST00000542460 KDM1AO60341 852 aa16.66■□□□□ 0.26
LIG1-204ENST00000542460 MT-ND3P03897 115 aa16.66■□□□□ 0.26
LIG1-204ENST00000542460 ATP6V0D1P61421 351 aa16.66■□□□□ 0.26
LIG1-204ENST00000542460 SP140Q13342 867 aa16.66■□□□□ 0.26
LIG1-204ENST00000542460 CSHL1Q14406 222 aa16.66■□□□□ 0.26
LIG1-204ENST00000542460 NR1D2Q14995 579 aa16.66■□□□□ 0.26
LIG1-204ENST00000542460 KRT71Q3SY84 523 aa16.66■□□□□ 0.26
LIG1-204ENST00000542460 UBE2R2Q712K3 238 aaPredicted RBP16.66■□□□□ 0.26
LIG1-204ENST00000542460 GLRX5Q86SX6 157 aa16.66■□□□□ 0.26
LIG1-204ENST00000542460 RASGRP3Q8IV61 690 aa16.66■□□□□ 0.26
LIG1-204ENST00000542460 CYP4X1Q8N118 509 aa16.66■□□□□ 0.26
LIG1-204ENST00000542460 SPATA6LQ8N4H0 392 aa16.66■□□□□ 0.26
LIG1-204ENST00000542460 FBXO15Q8NCQ5 510 aaPredicted RBP16.66■□□□□ 0.26
LIG1-204ENST00000542460 IFI44Q8TCB0 444 aa16.66■□□□□ 0.26
LIG1-204ENST00000542460 CCDC74AQ96AQ1 378 aa16.66■□□□□ 0.26
LIG1-204ENST00000542460 RAD51AP1Q96B01 352 aa16.66■□□□□ 0.26
LIG1-204ENST00000542460 HGH1Q9BTY7 390 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms