RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 TRIM43BA6NCK2 446 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 ECI2O75521 394 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 CBSLP0DN79 551 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 CBSP35520 551 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 COX10Q12887 443 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 ZNF540Q8NDQ6 660 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 LMO3Q8TAP4 145 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 SLCO2A1Q92959 643 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 ZBED6CLQ96FA7 236 aaPredicted RBP13.85□□□□□ -0.19
USP3-204ENST00000540797 NECTIN3Q9NQS3 549 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 TOR4AQ9NXH8 423 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 ERGIC3Q9Y282 383 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 U3KQV3 271 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 EFNA1P20827 205 aaPredicted RBP13.85□□□□□ -0.19
USP3-204ENST00000540797 BDKRB1P46663 353 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 RAB33AQ14088 237 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 PAOXQ6QHF9 649 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 CLNKQ7Z7G1 428 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 ANKLE1Q8NAG6 615 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 MIEF2Q96C03 454 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 TAC3Q9UHF0 121 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 MAGEB17A8MXT2 336 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 PCDH7O60245 1069 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 WFS1O76024 890 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 MYBPC1Q00872 1141 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 ZNF805Q5CZA5 627 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 PDZK1Q5T2W1 519 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 TRIQKQ629K1 86 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 ZDHHC24Q6UX98 284 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 NUDT13Q86X67 352 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 SPPL2CQ8IUH8 684 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 CLDN19Q8N6F1 224 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 CNTD1Q8N815 330 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 PIK3C3Q8NEB9 887 aa13.85□□□□□ -0.19
USP3-204ENST00000540797 MBLAC1A4D2B0 266 aaPredicted RBP13.84□□□□□ -0.19
USP3-204ENST00000540797 CENPXA8MT69 81 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 G3V2T6 193 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 MFN2O95140 757 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 IMPDH1P20839 514 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 MAPK10P53779 464 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 REP15Q6BDI9 236 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 SLC9B2Q86UD5 537 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 COX18Q8N8Q8 333 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 PIWIL1Q96J94 861 aaKnown RBP13.84□□□□□ -0.19
USP3-204ENST00000540797 A8MU76 341 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 MAN2B1O00754 1011 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 CCNA2P20248 432 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 PRKCHP24723 683 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 STK19P49842 368 aaPredicted RBP13.84□□□□□ -0.19
USP3-204ENST00000540797 LIPEQ05469 1076 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 GPRC6AQ5T6X5 926 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 ABRAXAS1Q6UWZ7 409 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 GSTCDQ8NEC7 633 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 OR4E2Q8NGC2 313 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 SLC35G5Q96KT7 338 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 TRAPPC9Q96Q05 1148 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 NSUN3Q9H649 340 aaKnown RBP13.84□□□□□ -0.19
USP3-204ENST00000540797 FAM86C2PA6NEL3 165 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 GRID2O43424 1007 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 SOCS5O75159 536 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 STC2O76061 302 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 TRAF3Q13114 568 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 OLIG2Q13516 323 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 QPCTQ16769 361 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 CLLU1OSQ5K130 101 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 FAM180AQ6UWF9 173 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 PTCHD4Q6ZW05 846 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 CAMKVQ8NCB2 501 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 CDK15Q96Q40 435 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 SLC32A1Q9H598 525 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 ALKBH4Q9NXW9 302 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 PTGFRNQ9P2B2 879 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 LOC100506127A0A0U1RQW1 187 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 MED26O95402 600 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 TGFB1P01137 390 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 IFNW1P05000 195 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 GRIA2P42262 883 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 CST9Q5W186 159 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 Q6ZVL8 140 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 LRRC70Q7Z2Q7 622 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 WDR6Q9NNW5 1121 aaKnown RBP13.84□□□□□ -0.19
USP3-204ENST00000540797 SPATA6Q9NWH7 488 aaPredicted RBP13.84□□□□□ -0.19
USP3-204ENST00000540797 TMEM59LQ9UK28 342 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 LIN7AO14910 233 aaPredicted RBP13.84□□□□□ -0.19
USP3-204ENST00000540797 KAT7O95251 611 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 F7P08709 466 aaPredicted RBP13.84□□□□□ -0.19
USP3-204ENST00000540797 CYP4B1P13584 511 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 IGSF8Q969P0 613 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 CDADC1Q9BWV3 514 aa13.84□□□□□ -0.19
USP3-204ENST00000540797 ALS2Q96Q42 1657 aa13.83□□□□□ -0.19
USP3-204ENST00000540797 MGRN1O60291 552 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 PGLSO95336 258 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 RAPSNQ13702 412 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 DHCR24Q15392 516 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 ZNF598Q86UK7 904 aaKnown RBP13.83□□□□□ -0.2
USP3-204ENST00000540797 GLB1L3Q8NCI6 653 aaPredicted RBP13.83□□□□□ -0.2
USP3-204ENST00000540797 RGMAQ96B86 450 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 DUSP26Q9BV47 211 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 TAPBPLQ9BX59 468 aa13.83□□□□□ -0.2
USP3-204ENST00000540797 ZNF358Q9NW07 568 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms