RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 AASDHQ4L235 1098 aaPredicted RBP18.47■□□□□ 0.55
TNFRSF1A-213ENST00000540022 SBSNQ6UWP8 590 aa18.47■□□□□ 0.55
TNFRSF1A-213ENST00000540022 ABRAXAS1Q6UWZ7 409 aa18.47■□□□□ 0.55
TNFRSF1A-213ENST00000540022 WASH2PQ6VEQ5 465 aa18.47■□□□□ 0.55
TNFRSF1A-213ENST00000540022 DGLUCYQ7Z3D6 616 aa18.47■□□□□ 0.55
TNFRSF1A-213ENST00000540022 ZNF548Q8NEK5 533 aaPredicted RBP18.47■□□□□ 0.55
TNFRSF1A-213ENST00000540022 FAM111AQ96PZ2 611 aa18.47■□□□□ 0.55
TNFRSF1A-213ENST00000540022 INSM2Q96T92 566 aaPredicted RBP18.47■□□□□ 0.55
TNFRSF1A-213ENST00000540022 WASH6PQ9NQA3 447 aa18.47■□□□□ 0.55
TNFRSF1A-213ENST00000540022 UCKL1Q9NWZ5 548 aa18.47■□□□□ 0.55
TNFRSF1A-213ENST00000540022 CPSF2Q9P2I0 782 aaKnown RBP18.47■□□□□ 0.55
TNFRSF1A-213ENST00000540022 PCOLCE2Q9UKZ9 415 aa18.47■□□□□ 0.55
TNFRSF1A-213ENST00000540022 CFAP20Q9Y6A4 193 aaKnown RBP18.47■□□□□ 0.55
TNFRSF1A-213ENST00000540022 LRP4O75096 1905 aa18.47■□□□□ 0.55
TNFRSF1A-213ENST00000540022 PIKFYVEQ9Y2I7 2098 aa18.46■□□□□ 0.55
TNFRSF1A-213ENST00000540022 GFYI3L273 518 aa18.46■□□□□ 0.55
TNFRSF1A-213ENST00000540022 SLC30A4O14863 429 aa18.46■□□□□ 0.55
TNFRSF1A-213ENST00000540022 AQP9O43315 295 aa18.46■□□□□ 0.55
TNFRSF1A-213ENST00000540022 PSIP1O75475 530 aaKnown RBP18.46■□□□□ 0.55
TNFRSF1A-213ENST00000540022 RBP1P09455 135 aa18.46■□□□□ 0.55
TNFRSF1A-213ENST00000540022 NR1D1P20393 614 aa18.46■□□□□ 0.55
TNFRSF1A-213ENST00000540022 ARRB1P49407 418 aaPredicted RBP18.46■□□□□ 0.55
TNFRSF1A-213ENST00000540022 KPNA2P52292 529 aaKnown RBP18.46■□□□□ 0.55
TNFRSF1A-213ENST00000540022 PHKG1Q16816 387 aa18.46■□□□□ 0.55
TNFRSF1A-213ENST00000540022 ANKRD42Q8N9B4 389 aa18.46■□□□□ 0.55
TNFRSF1A-213ENST00000540022 RHEBL1Q8TAI7 183 aa18.46■□□□□ 0.55
TNFRSF1A-213ENST00000540022 STAG3L4Q8TBR4 150 aa18.46■□□□□ 0.55
TNFRSF1A-213ENST00000540022 DENND1AQ8TEH3 1009 aa18.46■□□□□ 0.55
TNFRSF1A-213ENST00000540022 TFGQ92734 400 aaPredicted RBP18.46■□□□□ 0.55
TNFRSF1A-213ENST00000540022 ATOH8Q96SQ7 321 aa18.46■□□□□ 0.55
TNFRSF1A-213ENST00000540022 MRPL57Q9BQC6 102 aaKnown RBP18.46■□□□□ 0.55
TNFRSF1A-213ENST00000540022 RTKNQ9BST9 563 aa18.46■□□□□ 0.55
TNFRSF1A-213ENST00000540022 IL21RQ9HBE5 538 aa18.46■□□□□ 0.55
TNFRSF1A-213ENST00000540022 KNL1Q8NG31 2342 aa18.45■□□□□ 0.54
TNFRSF1A-213ENST00000540022 LNP1A1A4G5 178 aa18.45■□□□□ 0.54
TNFRSF1A-213ENST00000540022 OR52A4PA6NMU1 304 aa18.45■□□□□ 0.54
TNFRSF1A-213ENST00000540022 TARM1B6A8C7 271 aa18.45■□□□□ 0.54
TNFRSF1A-213ENST00000540022 IFRD1O00458 451 aaPredicted RBP18.45■□□□□ 0.54
TNFRSF1A-213ENST00000540022 ARHGAP33O14559 1287 aa18.45■□□□□ 0.54
TNFRSF1A-213ENST00000540022 KHNYNO15037 678 aaKnown RBP18.45■□□□□ 0.54
TNFRSF1A-213ENST00000540022 TM9SF1O15321 606 aa18.45■□□□□ 0.54
TNFRSF1A-213ENST00000540022 C8GP07360 202 aa18.45■□□□□ 0.54
TNFRSF1A-213ENST00000540022 F3P13726 295 aa18.45■□□□□ 0.54
TNFRSF1A-213ENST00000540022 OAS2P29728 719 aaKnown RBP18.45■□□□□ 0.54
TNFRSF1A-213ENST00000540022 ETV4P43268 484 aa18.45■□□□□ 0.54
TNFRSF1A-213ENST00000540022 SLC18A1P54219 525 aa18.45■□□□□ 0.54
TNFRSF1A-213ENST00000540022 PPP1R3AQ16821 1122 aa18.45■□□□□ 0.54
TNFRSF1A-213ENST00000540022 CCDC153Q494R4 210 aa18.45■□□□□ 0.54
TNFRSF1A-213ENST00000540022 UBE2R2Q712K3 238 aaPredicted RBP18.45■□□□□ 0.54
TNFRSF1A-213ENST00000540022 ADAMTSL2Q86TH1 951 aa18.45■□□□□ 0.54
TNFRSF1A-213ENST00000540022 SFTPA2Q8IWL1 248 aa18.45■□□□□ 0.54
TNFRSF1A-213ENST00000540022 PHC3Q8NDX5 983 aa18.45■□□□□ 0.54
TNFRSF1A-213ENST00000540022 ARMC2Q8NEN0 867 aa18.45■□□□□ 0.54
TNFRSF1A-213ENST00000540022 MDM1Q8TC05 714 aa18.45■□□□□ 0.54
TNFRSF1A-213ENST00000540022 C12orf66Q96MD2 445 aa18.45■□□□□ 0.54
TNFRSF1A-213ENST00000540022 FOPNLQ96NB1 174 aa18.45■□□□□ 0.54
TNFRSF1A-213ENST00000540022 SLC12A9Q9BXP2 914 aa18.45■□□□□ 0.54
TNFRSF1A-213ENST00000540022 MRPL46Q9H2W6 279 aaKnown RBP18.45■□□□□ 0.54
TNFRSF1A-213ENST00000540022 RNF112Q9ULX5 631 aa18.45■□□□□ 0.54
TNFRSF1A-213ENST00000540022 ASF1AQ9Y294 204 aa18.45■□□□□ 0.54
TNFRSF1A-213ENST00000540022 NCOR2Q9Y618 2525 aa18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 A0A1B0GTQ1 180 aa18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 ARHGEF33A8MVX0 844 aa18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 SLC16A5O15375 505 aa18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 YY2O15391 372 aa18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 KERAO60938 352 aa18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 ZWINTO95229 277 aa18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 ENGP17813 658 aa18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 BDKRB1P46663 353 aa18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 LIMK1P53667 647 aa18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 IL9RQ01113 521 aa18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 SP140Q13342 867 aa18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 EEF1AKMT2Q5JPI9 291 aaKnown RBP18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 DUS1LQ6P1R4 473 aaKnown RBP18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 IL27RAQ6UWB1 636 aa18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 GKN2Q86XP6 184 aa18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 SLC25A45Q8N413 288 aa18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 FAM46DQ8NEK8 389 aa18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 NUSAP1Q9BXS6 441 aaKnown RBP18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 GAREM1Q9H706 876 aa18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 MLXIPLQ9NP71 852 aa18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 IMP3Q9NV31 184 aaKnown RBP18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 UTP6Q9NYH9 597 aaKnown RBP18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 PDE10AQ9Y233 779 aa18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 PCDH15Q96QU1 1955 aa18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 TRBV23OR9-2A0A075B6M9 112 aa18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 CCDC189A1A4V9 331 aa18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 KRT87PA6NCN2 255 aa18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 LMO7DNF2Z398 122 aa18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 C1orf105O95561 183 aa18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 MTHFD2P13995 350 aa18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 EPHA8P29322 1005 aaPredicted RBP18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 HALP42357 657 aa18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 MAPK9P45984 424 aa18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 WDR4P57081 412 aaKnown RBP18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 TGFBIQ15582 683 aa18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 RPE65Q16518 533 aa18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 CCSMST1Q4G0I0 132 aa18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 IYDQ6PHW0 289 aa18.44■□□□□ 0.54
TNFRSF1A-213ENST00000540022 UNC5DQ6UXZ4 953 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms