RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 HAPLN2Q9GZV7 340 aa6.51□□□□□ -1.37
USP28-202ENST00000535607 NACA2Q9H009 215 aa6.51□□□□□ -1.37
USP28-202ENST00000535607 KATNBL1Q9H079 304 aa6.51□□□□□ -1.37
USP28-202ENST00000535607 GBA3Q9H227 469 aa6.51□□□□□ -1.37
USP28-202ENST00000535607 SEMA6AQ9H2E6 1030 aa6.51□□□□□ -1.37
USP28-202ENST00000535607 RNPEPQ9H4A4 650 aa6.51□□□□□ -1.37
USP28-202ENST00000535607 ZNF385DQ9H6B1 395 aa6.51□□□□□ -1.37
USP28-202ENST00000535607 TASP1Q9H6P5 420 aa6.51□□□□□ -1.37
USP28-202ENST00000535607 APOBEC3GQ9HC16 384 aaKnown RBP6.51□□□□□ -1.37
USP28-202ENST00000535607 TCF7L1Q9HCS4 588 aa6.51□□□□□ -1.37
USP28-202ENST00000535607 MAN1C1Q9NR34 630 aa6.51□□□□□ -1.37
USP28-202ENST00000535607 TBC1D13Q9NVG8 400 aa6.51□□□□□ -1.37
USP28-202ENST00000535607 ADAM29Q9UKF5 820 aa6.51□□□□□ -1.37
USP28-202ENST00000535607 CPQQ9Y646 472 aa6.51□□□□□ -1.37
USP28-202ENST00000535607 FAM25AB3EWG3 89 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 FAM25CB3EWG5 89 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 FAM25GB3EWG6 89 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 G3V2L1 256 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 H0Y626 953 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 NRP1O14786 923 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 PCDHGA12O60330 932 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 TBC1D4O60343 1298 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 VPS4BO75351 444 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 SEC24DO94855 1032 aaPredicted RBP6.5□□□□□ -1.37
USP28-202ENST00000535607 TRIM16O95361 564 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 HPRP00739 348 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 LDLRP01130 860 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 CALCAP01258 141 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 APOA1P02647 267 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 C8AP07357 584 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 KRT19P08727 400 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 CELA3BP08861 270 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 LTA4HP09960 611 aaKnown RBP6.5□□□□□ -1.37
USP28-202ENST00000535607 TFPTP0C1Z6 253 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 HNRNPLP14866 589 aaKnown RBP eCLIP6.5□□□□□ -1.37
USP28-202ENST00000535607 TCN1P20061 433 aaPredicted RBP6.5□□□□□ -1.37
USP28-202ENST00000535607 UBA1P22314 1058 aaKnown RBP6.5□□□□□ -1.37
USP28-202ENST00000535607 GSTM2P28161 218 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 ATICP31939 592 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 RPS9P46781 194 aaKnown RBP6.5□□□□□ -1.37
USP28-202ENST00000535607 LEPRP48357 1165 aaKnown RBP6.5□□□□□ -1.37
USP28-202ENST00000535607 RXRGP48443 463 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 ACOT2P49753 483 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 SLURP1P55000 103 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 SLC12A2P55011 1212 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 CDH15P55291 814 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 DNAJB13P59910 316 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 ACTR2P61160 394 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 GALNT1Q10472 559 aaPredicted RBP6.5□□□□□ -1.37
USP28-202ENST00000535607 PMS2P3Q13401 168 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 MTM1Q13496 603 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 PRPSAP1Q14558 356 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 SPCS2Q15005 226 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 MAPRE1Q15691 268 aaKnown RBP6.5□□□□□ -1.37
USP28-202ENST00000535607 PTPN20Q4JDL3 420 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 ARL13AQ5H913 290 aaPredicted RBP6.5□□□□□ -1.37
USP28-202ENST00000535607 COQ5Q5HYK3 327 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 FGD3Q5JSP0 725 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 AGBL4Q5VU57 503 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 REP15Q6BDI9 236 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 CXorf57Q6NSI4 855 aaKnown RBP6.5□□□□□ -1.37
USP28-202ENST00000535607 DENND1BQ6P3S1 775 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 SCYL2Q6P3W7 929 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 TTC23LQ6PF05 361 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 TMEM26Q6ZUK4 368 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 SPRED1Q7Z699 444 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 ITIH5Q86UX2 942 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 IGFN1Q86VF2 1251 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 HEATR4Q86WZ0 1026 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 SLC22A9Q8IVM8 553 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 ZBTB8OSQ8IWT0 167 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 RAVER1Q8IY67 606 aaKnown RBP6.5□□□□□ -1.37
USP28-202ENST00000535607 CMTR2Q8IYT2 770 aaKnown RBP6.5□□□□□ -1.37
USP28-202ENST00000535607 CBR4Q8N4T8 237 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 DCLK2Q8N568 766 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 PLA2G15Q8NCC3 412 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 TRPV3Q8NET8 790 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 GRPEL2Q8TAA5 225 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 TSPEARQ8WU66 669 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 HTR3CQ8WXA8 447 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 HDAC2Q92769 488 aaKnown RBP6.5□□□□□ -1.37
USP28-202ENST00000535607 CLIP3Q96DZ5 547 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 TXNDC15Q96J42 360 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 MAELQ96JY0 434 aaKnown RBP6.5□□□□□ -1.37
USP28-202ENST00000535607 GLT1D1Q96MS3 346 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 NPAS2Q99743 824 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 SH3GL1Q99961 368 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 MTG1Q9BT17 334 aaPredicted RBP6.5□□□□□ -1.37
USP28-202ENST00000535607 GATA5Q9BWX5 397 aaPredicted RBP6.5□□□□□ -1.37
USP28-202ENST00000535607 OR2B2Q9GZK3 357 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 C2orf40Q9H1Z8 148 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 MRPL46Q9H2W6 279 aaKnown RBP6.5□□□□□ -1.37
USP28-202ENST00000535607 NECTIN3Q9NQS3 549 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 XPNPEP1Q9NQW7 623 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 AGPAT4Q9NRZ5 378 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 SMOXQ9NWM0 555 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 SYBUQ9NX95 663 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 ACTR3BQ9P1U1 418 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 TMEM181Q9P2C4 612 aa6.5□□□□□ -1.37
USP28-202ENST00000535607 WARS2Q9UGM6 360 aaKnown RBP6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms