RNA–Protein interactions for RNA: ENST00000533979.5

ATM-223, Transcript of ATM serine/threonine kinase, human

TSL 3

Gene ATM, Length 705 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATM-223	ENST00000533979	TMEM47	Q9BQJ4	181 aa		4.57	□□□□□ -1.68
ATM-223	ENST00000533979	INPP5K	Q9BT40	448 aa		4.57	□□□□□ -1.68
ATM-223	ENST00000533979	POLDIP3	Q9BY77	421 aa	Known RBP	4.57	□□□□□ -1.68
ATM-223	ENST00000533979	CDT1	Q9H211	546 aa		4.57	□□□□□ -1.68
ATM-223	ENST00000533979	DNAJC17	Q9NVM6	304 aa	Known RBP	4.57	□□□□□ -1.68
ATM-223	ENST00000533979	CGN	Q9P2M7	1197 aa	Known RBP	4.57	□□□□□ -1.68
ATM-223	ENST00000533979	DNAJB4	Q9UDY4	337 aa		4.57	□□□□□ -1.68
ATM-223	ENST00000533979	AURKC	Q9UQB9	309 aa		4.57	□□□□□ -1.68
ATM-223	ENST00000533979	ZNF142	P52746	1687 aa	Predicted RBP	4.57	□□□□□ -1.68
ATM-223	ENST00000533979	DNMT1	P26358	1616 aa	Known RBP	4.57	□□□□□ -1.68
ATM-223	ENST00000533979	NEURL4	Q96JN8	1562 aa		4.57	□□□□□ -1.68
ATM-223	ENST00000533979	RERE	Q9P2R6	1566 aa		4.57	□□□□□ -1.68
ATM-223	ENST00000533979	ABCC1	P33527	1531 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	VPS8	Q8N3P4	1428 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	KIAA1107	Q9UPP5	1409 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	SYNRG	Q9UMZ2	1314 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	SLC9B1P1	A6NJY1	282 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979		H3BQ06	376 aa	Predicted RBP	4.56	□□□□□ -1.68
ATM-223	ENST00000533979	HSPB6	O14558	160 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	RNMT	O43148	476 aa	Known RBP	4.56	□□□□□ -1.68
ATM-223	ENST00000533979	KIF1C	O43896	1103 aa	Known RBP	4.56	□□□□□ -1.68
ATM-223	ENST00000533979	LETM1	O95202	739 aa	Predicted RBP	4.56	□□□□□ -1.68
ATM-223	ENST00000533979	HIST1H2AB	P04908	130 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	OR52Z1	P0C646	297 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	LINGO3	P0C6S8	592 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	UNG	P13051	313 aa	Predicted RBP	4.56	□□□□□ -1.68
ATM-223	ENST00000533979	PLA2G2A	P14555	144 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	HIST1H2AD	P20671	130 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	SHMT1	P34896	483 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	RYK	P34925	604 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	PCGF2	P35227	344 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	AVPR1A	P37288	418 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	ACAA2	P42765	397 aa	Known RBP	4.56	□□□□□ -1.68
ATM-223	ENST00000533979	KCNJ1	P48048	391 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	PCYT1A	P49585	367 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	GPR143	P51810	404 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	ST8SIA6	P61647	398 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	IRX3	P78415	501 aa	Predicted RBP	4.56	□□□□□ -1.68
ATM-223	ENST00000533979	MRPS34	P82930	218 aa	Known RBP	4.56	□□□□□ -1.68
ATM-223	ENST00000533979	HMGN5	P82970	282 aa	Known RBP	4.56	□□□□□ -1.68
ATM-223	ENST00000533979	ADORA2A-AS1	P86434	159 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	AKAP17A	Q02040	695 aa	Known RBP	4.56	□□□□□ -1.68
ATM-223	ENST00000533979	ACSM1	Q08AH1	577 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	PTPRCAP	Q14761	206 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	NFATC4	Q14934	902 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	TAZ	Q16635	292 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	TCTN1	Q2MV58	587 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	FUT11	Q495W5	492 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	TDRD12	Q587J7	1177 aa	Known RBP	4.56	□□□□□ -1.68
ATM-223	ENST00000533979	FSCB	Q5H9T9	825 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	SHE	Q5VZ18	495 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	TMEM71	Q6P5X7	295 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	ZCCHC12	Q6PEW1	402 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	NHLRC1	Q6VVB1	395 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	MEX3B	Q6ZN04	569 aa	Known RBP	4.56	□□□□□ -1.68
ATM-223	ENST00000533979	HIST3H2A	Q7L7L0	130 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	LDB1	Q86U70	411 aa	Predicted RBP	4.56	□□□□□ -1.68
ATM-223	ENST00000533979	OR14L1P	Q8NHC6	308 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	OCC1	Q8TAD7	63 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	TMEM163	Q8TC26	289 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	TRAF3IP1	Q8TDR0	691 aa	Predicted RBP	4.56	□□□□□ -1.68
ATM-223	ENST00000533979	ST7L	Q8TDW4	575 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	FAR1	Q8WVX9	515 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	PRCC	Q92733	491 aa	Predicted RBP	4.56	□□□□□ -1.68
ATM-223	ENST00000533979	BCL2L2	Q92843	193 aa	Predicted RBP	4.56	□□□□□ -1.68
ATM-223	ENST00000533979	EXT2	Q93063	718 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	RRNAD1	Q96FB5	475 aa	Known RBP	4.56	□□□□□ -1.68
ATM-223	ENST00000533979	LRRC3B	Q96PB8	259 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	SIN3A	Q96ST3	1273 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	SH3GL2	Q99962	352 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	CRACR2A	Q9BSW2	395 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	FZD8	Q9H461	694 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	KLHL31	Q9H511	634 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	COPG2	Q9UBF2	871 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	HACL1	Q9UJ83	578 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	FZD10	Q9ULW2	581 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	RAP2C	Q9Y3L5	183 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	LSM4	Q9Y4Z0	139 aa	Known RBP	4.56	□□□□□ -1.68
ATM-223	ENST00000533979	CAMTA1	Q9Y6Y1	1673 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	TCF20	Q9UGU0	1960 aa	Known RBP	4.56	□□□□□ -1.68
ATM-223	ENST00000533979	ZNF518A	Q6AHZ1	1483 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	SCAF11	Q99590	1463 aa	Known RBP	4.56	□□□□□ -1.68
ATM-223	ENST00000533979	MBD5	Q9P267	1494 aa		4.56	□□□□□ -1.68
ATM-223	ENST00000533979	ITSN2	Q9NZM3	1697 aa		4.55	□□□□□ -1.68
ATM-223	ENST00000533979	ATP8B3	O60423	1300 aa		4.55	□□□□□ -1.68
ATM-223	ENST00000533979		A0A1W2PPM1	405 aa		4.55	□□□□□ -1.68
ATM-223	ENST00000533979	C1orf226	A1L170	272 aa		4.55	□□□□□ -1.68
ATM-223	ENST00000533979	HSPB2	A8KAH6	182 aa		4.55	□□□□□ -1.68
ATM-223	ENST00000533979	FAM157A	C9JC47	383 aa		4.55	□□□□□ -1.68
ATM-223	ENST00000533979	FAM86B1	E9PN63	330 aa		4.55	□□□□□ -1.68
ATM-223	ENST00000533979	EIF3D	O15371	548 aa	Known RBP eCLIP	4.55	□□□□□ -1.68
ATM-223	ENST00000533979	SLC25A17	O43808	307 aa		4.55	□□□□□ -1.68
ATM-223	ENST00000533979	AKAP3	O75969	853 aa		4.55	□□□□□ -1.68
ATM-223	ENST00000533979	RSL1D1	O76021	490 aa	Known RBP	4.55	□□□□□ -1.68
ATM-223	ENST00000533979	ZWINT	O95229	277 aa		4.55	□□□□□ -1.68
ATM-223	ENST00000533979	IFNB1	P01574	187 aa		4.55	□□□□□ -1.68
ATM-223	ENST00000533979	VIM	P08670	466 aa	Known RBP	4.55	□□□□□ -1.68
ATM-223	ENST00000533979	FAM86B2	P0C5J1	330 aa		4.55	□□□□□ -1.68
ATM-223	ENST00000533979	FGF3	P11487	239 aa	Predicted RBP	4.55	□□□□□ -1.68
ATM-223	ENST00000533979	PCNA	P12004	261 aa		4.55	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms