RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 CERS2Q96G23 380 aa19.32■□□□□ 0.68
CPSF1-209ENST00000532725 ZDHHC12Q96GR4 267 aa19.32■□□□□ 0.68
CPSF1-209ENST00000532725 ZMYND15Q9H091 742 aa19.32■□□□□ 0.68
CPSF1-209ENST00000532725 OCIAD1Q9NX40 245 aa19.32■□□□□ 0.68
CPSF1-209ENST00000532725 MOCS1Q9NZB8 636 aa19.32■□□□□ 0.68
CPSF1-209ENST00000532725 SEMA5BQ9P283 1151 aa19.32■□□□□ 0.68
CPSF1-209ENST00000532725 PISDQ9UG56 409 aa19.32■□□□□ 0.68
CPSF1-209ENST00000532725 MED16Q9Y2X0 877 aa19.32■□□□□ 0.68
CPSF1-209ENST00000532725 OR6C74A6NCV1 312 aa19.31■□□□□ 0.68
CPSF1-209ENST00000532725 KIF1CO43896 1103 aaKnown RBP19.31■□□□□ 0.68
CPSF1-209ENST00000532725 AHSGP02765 367 aa19.31■□□□□ 0.68
CPSF1-209ENST00000532725 ANKRD34CP0C6C1 535 aa19.31■□□□□ 0.68
CPSF1-209ENST00000532725 CARSP49589 748 aaKnown RBP19.31■□□□□ 0.68
CPSF1-209ENST00000532725 PPP1CAP62136 330 aa19.31■□□□□ 0.68
CPSF1-209ENST00000532725 CAV1Q03135 178 aa19.31■□□□□ 0.68
CPSF1-209ENST00000532725 GBX1Q14549 363 aa19.31■□□□□ 0.68
CPSF1-209ENST00000532725 TMED2Q15363 201 aa19.31■□□□□ 0.68
CPSF1-209ENST00000532725 IRGCQ6NXR0 463 aa19.31■□□□□ 0.68
CPSF1-209ENST00000532725 ZDHHC24Q6UX98 284 aa19.31■□□□□ 0.68
CPSF1-209ENST00000532725 CLEC14AQ86T13 490 aa19.31■□□□□ 0.68
CPSF1-209ENST00000532725 ZBED8Q8IZ13 594 aa19.31■□□□□ 0.68
CPSF1-209ENST00000532725 MNS1Q8NEH6 495 aa19.31■□□□□ 0.68
CPSF1-209ENST00000532725 OR5K2Q8NHB8 316 aa19.31■□□□□ 0.68
CPSF1-209ENST00000532725 TRIT1Q9H3H1 467 aaKnown RBP19.31■□□□□ 0.68
CPSF1-209ENST00000532725 SRMSQ9H3Y6 488 aa19.31■□□□□ 0.68
CPSF1-209ENST00000532725 THSD1Q9NS62 852 aa19.31■□□□□ 0.68
CPSF1-209ENST00000532725 POLG2Q9UHN1 485 aa19.31■□□□□ 0.68
CPSF1-209ENST00000532725 RAXQ9Y2V3 346 aa19.31■□□□□ 0.68
CPSF1-209ENST00000532725 PCDHGA7Q9Y5G6 932 aa19.31■□□□□ 0.68
CPSF1-209ENST00000532725 SRRM3A6NNA2 597 aaPredicted RBP19.3■□□□□ 0.68
CPSF1-209ENST00000532725 EIF3HO15372 352 aaKnown RBP eCLIP19.3■□□□□ 0.68
CPSF1-209ENST00000532725 NVLO15381 856 aaKnown RBP19.3■□□□□ 0.68
CPSF1-209ENST00000532725 CLCN7P51798 805 aa19.3■□□□□ 0.68
CPSF1-209ENST00000532725 C8orf74Q6P047 294 aa19.3■□□□□ 0.68
CPSF1-209ENST00000532725 KIAA0408Q6ZU52 694 aa19.3■□□□□ 0.68
CPSF1-209ENST00000532725 PRSS42Q7Z5A4 293 aa19.3■□□□□ 0.68
CPSF1-209ENST00000532725 GALNT7Q86SF2 657 aa19.3■□□□□ 0.68
CPSF1-209ENST00000532725 BMPERQ8N8U9 685 aa19.3■□□□□ 0.68
CPSF1-209ENST00000532725 NOA1Q8NC60 698 aaKnown RBP19.3■□□□□ 0.68
CPSF1-209ENST00000532725 SNIP1Q8TAD8 396 aaKnown RBP19.3■□□□□ 0.68
CPSF1-209ENST00000532725 GABPB2Q8TAK5 448 aaPredicted RBP19.3■□□□□ 0.68
CPSF1-209ENST00000532725 FBXO25Q8TCJ0 367 aa19.3■□□□□ 0.68
CPSF1-209ENST00000532725 FAM136AQ96C01 138 aa19.3■□□□□ 0.68
CPSF1-209ENST00000532725 HGH1Q9BTY7 390 aa19.3■□□□□ 0.68
CPSF1-209ENST00000532725 B3GNT4Q9C0J1 378 aa19.3■□□□□ 0.68
CPSF1-209ENST00000532725 KLHL42Q9P2K6 505 aa19.3■□□□□ 0.68
CPSF1-209ENST00000532725 COMMD10Q9Y6G5 202 aa19.3■□□□□ 0.68
CPSF1-209ENST00000532725 CELSR3Q9NYQ7 3312 aa19.3■□□□□ 0.68
CPSF1-209ENST00000532725 ZZEF1O43149 2961 aa19.29■□□□□ 0.68
CPSF1-209ENST00000532725 CTAGE15A4D2H0 777 aa19.29■□□□□ 0.68
CPSF1-209ENST00000532725 B4E171 279 aa19.29■□□□□ 0.68
CPSF1-209ENST00000532725 BTN3A3O00478 584 aa19.29■□□□□ 0.68
CPSF1-209ENST00000532725 CTAGE8P0CG41 777 aa19.29■□□□□ 0.68
CPSF1-209ENST00000532725 POLR2CP19387 275 aaPredicted RBP19.29■□□□□ 0.68
CPSF1-209ENST00000532725 SLC5A2P31639 672 aa19.29■□□□□ 0.68
CPSF1-209ENST00000532725 EIF2S3P41091 472 aaKnown RBP19.29■□□□□ 0.68
CPSF1-209ENST00000532725 TSPAN7P41732 249 aa19.29■□□□□ 0.68
CPSF1-209ENST00000532725 MAPK10P53779 464 aa19.29■□□□□ 0.68
CPSF1-209ENST00000532725 CACHD1Q5VU97 1274 aa19.29■□□□□ 0.68
CPSF1-209ENST00000532725 UNC5DQ6UXZ4 953 aa19.29■□□□□ 0.68
CPSF1-209ENST00000532725 FAM92BQ6ZTR7 304 aa19.29■□□□□ 0.68
CPSF1-209ENST00000532725 CTAGE6Q86UF2 777 aa19.29■□□□□ 0.68
CPSF1-209ENST00000532725 AMIGO1Q86WK6 493 aa19.29■□□□□ 0.68
CPSF1-209ENST00000532725 OOSP2Q86WS3 158 aa19.29■□□□□ 0.68
CPSF1-209ENST00000532725 CTAGE4Q8IX94 777 aa19.29■□□□□ 0.68
CPSF1-209ENST00000532725 ADGRF3Q8IZF5 1079 aa19.29■□□□□ 0.68
CPSF1-209ENST00000532725 ZBTB2Q8N680 514 aa19.29■□□□□ 0.68
CPSF1-209ENST00000532725 CFAP61Q8NHU2 1237 aa19.29■□□□□ 0.68
CPSF1-209ENST00000532725 PYROXD1Q8WU10 500 aa19.29■□□□□ 0.68
CPSF1-209ENST00000532725 KLHL6Q8WZ60 621 aa19.29■□□□□ 0.68
CPSF1-209ENST00000532725 KCNJ9Q92806 393 aa19.29■□□□□ 0.68
CPSF1-209ENST00000532725 USP7Q93009 1102 aa19.29■□□□□ 0.68
CPSF1-209ENST00000532725 TAAR9Q96RI9 348 aa19.29■□□□□ 0.68
CPSF1-209ENST00000532725 SLC30A3Q99726 388 aa19.29■□□□□ 0.68
CPSF1-209ENST00000532725 AARSD1Q9BTE6 412 aaKnown RBP19.29■□□□□ 0.68
CPSF1-209ENST00000532725 ZNF768Q9H5H4 540 aaKnown RBP19.29■□□□□ 0.68
CPSF1-209ENST00000532725 XKR8Q9H6D3 395 aa19.29■□□□□ 0.68
CPSF1-209ENST00000532725 SAYSD1Q9NPB0 183 aa19.29■□□□□ 0.68
CPSF1-209ENST00000532725 PPANQ9NQ55 473 aaKnown RBP19.29■□□□□ 0.68
CPSF1-209ENST00000532725 ESYT3A0FGR9 886 aa19.28■□□□□ 0.68
CPSF1-209ENST00000532725 EFCAB7A8K855 629 aa19.28■□□□□ 0.68
CPSF1-209ENST00000532725 C9orf172C9J069 976 aa19.28■□□□□ 0.68
CPSF1-209ENST00000532725 E5RI56 91 aa19.28■□□□□ 0.68
CPSF1-209ENST00000532725 ATP5DP30049 168 aa19.28■□□□□ 0.68
CPSF1-209ENST00000532725 TIAL1Q01085 375 aaKnown RBP eCLIP19.28■□□□□ 0.68
CPSF1-209ENST00000532725 MC2RQ01718 297 aa19.28■□□□□ 0.68
CPSF1-209ENST00000532725 ACSBG2Q5FVE4 666 aa19.28■□□□□ 0.68
CPSF1-209ENST00000532725 GIMAP7Q8NHV1 300 aa19.28■□□□□ 0.68
CPSF1-209ENST00000532725 GSDMBQ8TAX9 411 aa19.28■□□□□ 0.68
CPSF1-209ENST00000532725 MAP3K3Q99759 626 aa19.28■□□□□ 0.68
CPSF1-209ENST00000532725 TWSG1Q9GZX9 223 aa19.28■□□□□ 0.68
CPSF1-209ENST00000532725 CCDC68Q9H2F9 335 aa19.28■□□□□ 0.68
CPSF1-209ENST00000532725 FBXO8Q9NRD0 319 aa19.28■□□□□ 0.68
CPSF1-209ENST00000532725 SLC17A6Q9P2U8 582 aa19.28■□□□□ 0.68
CPSF1-209ENST00000532725 DMGDHQ9UI17 866 aaKnown RBP19.28■□□□□ 0.68
CPSF1-209ENST00000532725 ICKQ9UPZ9 632 aa19.28■□□□□ 0.68
CPSF1-209ENST00000532725 TDRKHQ9Y2W6 561 aaKnown RBP19.28■□□□□ 0.68
CPSF1-209ENST00000532725 DHRS7Q9Y394 339 aa19.28■□□□□ 0.68
CPSF1-209ENST00000532725 IGHV5-51A0A0C4DH38 117 aa19.27■□□□□ 0.68
CPSF1-209ENST00000532725 BTN3A1O00481 513 aa19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms